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EGA archive

@egaarchive.bsky.social

The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from research projects. https://ega-archive.org/

273 Followers  |  58 Following  |  122 Posts  |  Joined: 04.12.2024  |  2.0084

Latest posts by egaarchive.bsky.social on Bluesky


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The second EGA newsletter is out!

πŸš€ Discover the insights from the #FederatedEGA Swedish Node (@nbis.se)
πŸ’₯ Introducing FEGA Affiliate: a new way to become part of Federated EGA
πŸ’‘ The Beacon Template UI is now available

There is much more to read in the latest issue!
➑️ mailchi.mp/130c2186dfd1...

18.02.2026 13:31 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Thank you to everyone who joined the ELIXIR Italy All Hands Meeting 2026.
A special thanks to all those who worked behind the scenes to make this event possible.

It was great to see the ELIXIR-IT community come together.

10.02.2026 18:39 β€” πŸ‘ 3    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Agenda | Festival of Genomics London 2026 Explore the comprehensive agenda for the Festival of Genomics & Biodata London 2026. Filter by day, theatre, or topic to plan your experience.

🧬We are at #FOG2026, the Festival of Genomics & Biodata! Don't miss today's talk: "The #FederatedEGA: Enabling Global Access to Human Genomics Data"

πŸ“ 15h10, Biodata Stage
πŸ“£ @malloryfreeberg.bsky.social, Team Lead for EGA at @ebi.embl.org

Check the full agendaβ†˜οΈ
festivalofgenomics.com/london/agenda

28.01.2026 12:04 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Dear EGA users:

Our hard-working staff are taking a break over the holiday and new year season 🌟 EGA services will continue to run, but please expect delays when emailing our Helpdesk

The EGA team, @crg.eu and @ebi.embl.org, wish you a joyful and restful holiday seasonπŸŽ„!

23.12.2025 16:17 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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What a year πŸš€ We are excited to share an overview of our journey through 2025!

Have a look to get a glimpse of the projects we participated in, the status of #FederatedEGA, some numbers regarding our services, and more πŸ”Žβ†˜οΈ

23.12.2025 16:15 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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πŸŽ„ We are #hiring! πŸŽ„

Are you looking for a fresh start for 2026 and want to be part of an amazing team? We are seeking a Software Developer to join our team at the @ebi.embl.org!

Apply now ➑️ embl.wd103.myworkdayjobs.com/EMBL/job/Hin...

19.12.2025 13:00 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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If you think we can collaborate in your initiative or consortium, please don’t hesitate to contact us. Let’s work together!

➑️ ega-archive.org

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Expertise in Ethical, Legal and Social Implications (ELSI)

We can support ELSI aspects, including expert contributions on General Data Protection Regulation (GDPR) application and @ga4gh.org recommendations, among others

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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πŸ’¬ Technical and scientific communication ability

We can help consortia develop outreach and communication materials focused on data sharing practices

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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🀝 Federated network creation and management expertise

We bring our experience in designing and operating federated data networks, offering insights on the technical, legal, and governance aspects of managing sensitive data

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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πŸ› οΈ #FederatedEGA node setup support

We offer scientific and operational guidance tailored to the maturity and funding of the partner institution

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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πŸ’‘ Beacon setup support

We can assist consortia in deploying their own Beacon services and optimizing datasets for discoverability. This will help any research group or consortium to comply with FAIR principles!

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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🎯 Tailoring our platform to better suit your project's data or users

We can evaluate tailoring key tools for data submission, technical support, and Data Access Committees (DAC) to better meet the specific needs of a project

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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πŸ“ Data management expertise

We can deal with the project’s data management work thanks to our data curators’ knowledge in handling genomic, clinical, and scientific data

17.12.2025 12:24 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

The EGA is more than just an archive! We are involved in international partnerships and consortia across many scientific fields, providing them with valuable experience in numerous aspects

Here are some areas where the EGA can contribute to large-scale research initiatives πŸ§΅β†˜οΈ

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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If you are creating or planning an international consortium for securing research funding, this thread is for you!

17.12.2025 12:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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πŸ”Ž Take a tour of the EASIGEN website and see how we’re desgining the future of genomics in Europe ➑️ easigen.eu

✨ Explore:
🧬 Our vision & roadmap
πŸ—ΊοΈ Consortium partners across Europe
πŸ“‚ Previous projects like ESGI & EASI-Genomics
πŸ“… Upcoming conferences & workshop that you don't want to miss!

10.12.2025 09:13 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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EGA European Genome-Phenome Archive - EGA European Genome-Phenome Archive The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projec...

And more papers are waiting for you 🌟! Visit our website anytime to delve into the latest published papers that showcase the wealth of data deposited at the EGA and the possibilities of data reuse:

➑️ ega-archive.org

11.11.2025 12:33 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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The genomic landscape of relapsed infant and childhood KMT2A-rearranged acute leukemia - Nature Communications Infant KMT2A-rearranged acute lymphoblastic leukemia is associated with poor overall survival rates. Here, the authors use WGS and WES of 36 relapsed KMT2A-rearranged ALL and AML patients and fin...

πŸ“ The genomic landscape of relapsed infant and childhood KMT2A-rearranged acute leukemia
πŸ“° Published in @natcomms.nature.com
🀲 Deposited data: EGAS00001008197
πŸ”— www.nature.com/articles/s41...

11.11.2025 12:33 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Genome-wide CRISPR screen identifies splicing factor SF3B4 in driving hepatocellular carcinoma CRISPR knockout screen in HCC organoids identified SF3B4 in driving HCC and ferroptosis in limiting lenvatinib response.

πŸ“ Genome-wide CRISPR screen identifies splicing factor SF3B4 in driving hepatocellular carcinoma
πŸ“° Published in Science Advances
🀲 Deposited data: EGAS50000001129 | EGAS50000000848
πŸ”— www.science.org/doi/10.1126/...

11.11.2025 12:33 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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A pan-disease and population-level single-cell TCRΞ±Ξ² repertoire reference - Cell Discovery Cell Discovery - A pan-disease and population-level single-cell TCRΞ±Ξ² repertoire reference

πŸ“ A pan-disease and population-level single-cell TCRΞ±Ξ² repertoire reference
πŸ“° Published in Cell Discovery
🀝 Reused data: EGAS00001004894
πŸ”— www.nature.com/articles/s41...

11.11.2025 12:33 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Postnatal sustentacular cells as chromaffin progenitors and tumor cells of origin in VHL-related paragangliomas - npj Precision Oncology npj Precision Oncology - Postnatal sustentacular cells as chromaffin progenitors and tumor cells of origin in VHL-related paragangliomas

πŸ“ Postnatal sustentacular cells as chromaffin progenitors and tumor cells of origin in VHL-related paragangliomas
πŸ“° Published in npj Precision Oncology
🀲 Deposited data: EGAS50000001184
πŸ”— www.nature.com/articles/s41...

11.11.2025 12:33 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Ξ²2-integrins as biomarkers in urothelial cancer Ξ²2-integrins are a family of adhesion proteins expressed in immune cells that play multiple roles in anti-tumor immunity. Ξ²2-integrins regulate tumor infiltration of anti-tumorigenic immune cells such...

πŸ“ Ξ²2-integrins as biomarkers in urothelial cancer
πŸ“° Published in @plosone.org
🀝 Reused data: EGAS00001002556
πŸ”— journals.plos.org/plosone/arti...

11.11.2025 12:33 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
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πŸš€ Data reuse can significantly enhance the potential of any dataset! Occasionally, we showcase some of the latest papers featuring deposited data at the EGA or reused data from the Archive.

Check out our latest compilation πŸ§΅β†˜οΈ

11.11.2025 12:33 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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#DeCodingHEREDITARY
πŸ“šπŸ› οΈ Check out Deliverable 5.1: Visualization components for sequences, networks, text, and high- dimensional data.

πŸ”¬ It highlights the use of interactive data visualization and visual analytics to make sense of large, complex datasets.Β 

πŸ“₯ https://zenodo.org/records/14628086

31.10.2025 11:30 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
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🌟 We are #hiring 🌟

Explore the open positions to join our team at the @crg.eu in Barcelona! Apply now:

πŸ”Ή Operations Technician: recruitment.crg.eu/content/jobs...
πŸ”Ή Operations Bioinformatician: recruitment.crg.eu/content/jobs...

29.10.2025 11:55 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Are you looking for a PhD? Join us in Barcelona! You'll dive into a community of >100 PhD students from 30 countries exploring the frontiers of biology. You can also join an online workshop on 6 November (15:00 CET) to learn how to find the right lab for you.

More info: www.crg.eu/en/content/t...

23.10.2025 07:55 β€” πŸ‘ 25    πŸ” 28    πŸ’¬ 1    πŸ“Œ 8
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European network of trusted research environments (EOSC-ENTRUST) project EOSC-ENTRUST aims to create a European network of Trusted Research Environments (TREs) for sensitive data.

Tomorrow, Jordi Rambla, Team Leader of the EGA - @crg.eu, will participate in the #EOSC-ENTRUST Sustainability Workshop:

πŸ’¬ Perspectives and lessons learned from #FederatedEGA and the Genome Data Infrastructure (GDI) project
πŸ“ October 23, 15:40-15:55 CEST

More info: eosc-entrust.eu/news/eosc-en...

22.10.2025 07:09 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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🎯 Today's #ELIXIRFridayReads is a paper πŸ’‘ focusing on financing models that support #dataresources and associated services in a long-term data infrastructure. Read more πŸ‘‰ https://loom.ly/9UihRMg
@elixir-nl.bsky.social #ResearchInfrastructure

17.10.2025 03:30 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

πŸ§¬πŸ’¬ Tomorrow, Abeer Fadda, bioinformatics lead at the EGA - @crg.eu team and researcher in the @hereditaryeu.bsky.social project, will be participating in a roundtable on genomic medicine at #RIES2025

Check out the agenda ➑️ forumries.com/programa/

15.10.2025 12:15 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

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