Using PR2
www.nature.com/articles/s41...
@daniel-vaulot.bsky.social
Biological oceanographer focusing on marine protists. Developing the PR2 databases for metabarcoding: https://pr2-database.org Emeritus at CNRS (SBR, Roscoff) and Guest Investigator at the University of Oslo (AQUA section, IBV). https://daniel-vaulot.fr
Using PR2
www.nature.com/articles/s41...
Superb pictures...
14.11.2025 07:44 โ ๐ 1 ๐ 0 ๐ฌ 1 ๐ 0Fantastic work done with a very large number of RCC strains.
03.11.2025 10:48 โ ๐ 5 ๐ 2 ๐ฌ 1 ๐ 0Another piece of fascinating work done with RCC strains.
03.11.2025 10:49 โ ๐ 2 ๐ 2 ๐ฌ 0 ๐ 0Superbe....
29.10.2025 19:10 โ ๐ 1 ๐ 0 ๐ฌ 0 ๐ 0We have added more than 900 new GenBank sequences to the RCC database that are linked to the web page of the corresponding strains.
29.10.2025 10:10 โ ๐ 7 ๐ 3 ๐ฌ 0 ๐ 0New version of PR2 that now includes the eKOI coi database recently published.
28.10.2025 09:11 โ ๐ 2 ๐ 3 ๐ฌ 0 ๐ 0PR2 primers version 2.1.0 has been released. This does not include any new primer, but now the database uses the latest version of PR2 (5.1.1) to perform in silico analyses.
Access here: app.pr2-primers.org
New publication: "A novel taxonomic database for eukaryotic mitochondrial cytochrome oxidase subunit I gene #eKOI, with a focus on #protists diversity" with Daniel Vaulot @daniel-vaulot.bsky.social from @biovitenskap.bsky.social
Published in Database by @oxfordacademic.bsky.social
New publication: "Towards a trait-based framework for #protist ecology and evolution" with Daniel Vaulot @daniel-vaulot.bsky.social from @biovitenskap.bsky.social
Published in Trends in Microbiology @cp-trendsmicrobiol.bsky.social by @cellpress.bsky.social
The lost art of scientific illustration:
from August Brauer's deep-sea fish
metaPR2 version 3.0 has just been released.
Here are the major changes:
- Metabarcodes (ASVs) are now annotated with the latest version of the PR2 reference sequence database (5.1.0).
- 8 new published datasets have been added from the Arctic and from the South West Pacific.
app.metapr2.org
A paper just came out in Science about giant photosystem complex in Gephyrocapsa huxleyi RCC6660 www.science.org/doi/full/10....
15.09.2025 13:09 โ ๐ 2 ๐ 2 ๐ฌ 0 ๐ 0A new video from the MarinnoNET proejct to which RCC is a partner.
www.youtube.com/watch?v=xkD8...
I would never believe this would happen in a Canadian universityโน๏ธ
26.08.2025 10:28 โ ๐ 2 ๐ 0 ๐ฌ 1 ๐ 0Such statements undermine funding efforts for large scale oceanographic projects. I am sure Trump would lovet it...
08.08.2025 18:33 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0The following statement is utterly misleading "The cost of this venture pales in comparison to running a scientific research vessel, while yielding far more information..." A bunch of random measurements will never replace a carefully planned cruise with a very large number of metadata.
08.08.2025 18:33 โ ๐ 0 ๐ 0 ๐ฌ 1 ๐ 0It was so nice and so fulfilling to interact with you both...
30.07.2025 18:04 โ ๐ 4 ๐ 0 ๐ฌ 0 ๐ 0Very nice led by Clarence and Adriana...
28.06.2025 14:42 โ ๐ 4 ๐ 0 ๐ฌ 0 ๐ 0ASM is so US centered... mostly American authors, a few European and no one else from South America, Africa or Asia... a real shame.
20.06.2025 18:15 โ ๐ 1 ๐ 0 ๐ฌ 0 ๐ 0We have contributed to a paper led by Kenneth Timmis on the murky world of predatory journals:
enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
We have an A in house with a brillant master thesis defence of Sandra Irรฉn!!! First master student of the GEEK lab in Norway! ๐ Thanks to @maritbjorbaekmo.bsky.social and Inger Skrede for a delightful & constructive discussion. #protists #proudadvisor ๐ฌ๐งฌ๐ฉโ๐ป @biovitenskap.bsky.social
09.06.2025 12:59 โ ๐ 16 ๐ 3 ๐ฌ 0 ๐ 0Congratulations Puri... Is the speech available anywhere ?
05.06.2025 10:10 โ ๐ 0 ๐ 0 ๐ฌ 1 ๐ 0Dose of Protist Art: Chatton's chapter 1952 "Classe des Dinoflagelles ou Pรฉridiniens" in Traitรฉ de Zoologie, Tome 1A. Fig. 1 Euglena intermedia; Fig. 2 Gyrodinium melo; Fig. 3 Amphidinium corpulentum; Fig. 4 Warnowia maculata; Fig. 5 radiolarian Auloceros elegans #protistsonsky
27.05.2025 07:26 โ ๐ 46 ๐ 4 ๐ฌ 1 ๐ 2Fantastic work led by Hie Lim, my office neighbour for 4 years in Singapore
16.05.2025 07:58 โ ๐ 2 ๐ 0 ๐ฌ 0 ๐ 0Join us @thembauk.bsky.social in Plymouth for the 4th edition of the Advances in Coccolithophore Research
๐ ๐ฌ๐ฆ ๐งช๐ <Coccolithophore emoji>
โ ๏ธRegister Now: shorturl.at/ly1LT
#Coccolithophores #protistsonsky
Coccolithophore research on: Biogeochemistry, Cell Biology, Climate Change, Ecosystems
The RCC is participating in the MALDIBANK project.
MALDIBANKโs main goal is to conceptualize a global, cloud-based, open MALDI spectra databank in order to promote identification of microorganisms.
Deep origin of eukaryotes outside Heimdallarchaeia within Asgardarchaeota www.nature.com/articles/s41... #jcampubs
08.05.2025 13:40 โ ๐ 17 ๐ 6 ๐ฌ 0 ๐ 1