Congrats!! 🙌 Looking forward to follow your future work!
09.12.2025 09:45 — 👍 1 🔁 0 💬 0 📌 0
Thrilled to share our new review in Current Opinion in Genetics & Development on TE driven innovation in gene regulation🤘. I am honored to be part of this with two major TE aficionados @cedricfeschotte.bsky.social and @trono-lab.bsky.social
#TEsky #TEworldwide
authors.elsevier.com/c/1m6MC,LqAZ...
15.11.2025 17:23 — 👍 54 🔁 19 💬 0 📌 1
GitHub - COMBINE-lab/mim: A small, auxiliary index to massively improve parallel fastq parsing
A small, auxiliary index to massively improve parallel fastq parsing - COMBINE-lab/mim
Ok; mim (github.com/COMBINE-lab/...) preprint submitted! Excited for folks to see it and share thoughts. The key takeaway; mim allows the quick, one-time, building of a small auxiliary index that then allows scaling gzipped FASTQ parsing linearly in # of threads. 1/2
25.11.2025 14:13 — 👍 27 🔁 13 💬 1 📌 3
Ett fascinerande land med otroligt mycket potential hursomhelst!
21.11.2025 14:20 — 👍 1 🔁 0 💬 1 📌 0
Oftare än mig blir det, men inte riktigt varje år. Hon växte upp större delen av tiden i Sverige så. Men jo, vet att många åker oftare.
21.11.2025 14:06 — 👍 1 🔁 0 💬 1 📌 0
Ja, sant, verkar knepigt nästan överallt utanför Addis :/ Inte själv varit där på ett antal år faktiskt. Vore kul att besöka igen någon gång snart dock.
21.11.2025 13:59 — 👍 1 🔁 0 💬 1 📌 0
Haha, 13 svåra år här 😅
21.11.2025 13:46 — 👍 1 🔁 0 💬 1 📌 0
Learn Amharic for free
Explore the top 6 reasons to learn Amharic, including career opportunities, travel benefits, cultural insights, and more. Discover why Amharic is an important language to master.
Det bästa jag hittat (förutom någon kort kurs på Audible, och lite böcker, som jag inte hinner med) är detta från 50 languages: www.50languages.com/amharic-for-...
Tyvärr repeteras inte fraserna tillräckligt för att man ska kunna komma ihåg dem. Jag tror detta hade funkat med lite bättre klippning!
21.11.2025 13:40 — 👍 1 🔁 0 💬 0 📌 0
Gift med en habesha, så visst :)
Försökt lära mig amarinja också, men det är ju lite skralt med resurser tyvärr. Önskar att Pimsleur hade Amarinja-kurser, men de verkar inte intresserade.
21.11.2025 13:39 — 👍 1 🔁 0 💬 2 📌 0
Gobez!
21.11.2025 08:01 — 👍 1 🔁 0 💬 1 📌 0
I might be biased (as they mention scipipe.org), but a recommended related paper:
www.nature.com/articles/s41... #sciworkflows
13.11.2025 20:45 — 👍 1 🔁 0 💬 0 📌 0
The last episode of the three part debate is out today! Check it out on the platform of your choice
🤩 Don't forget to give us stars and reviews to help spread the podcast to new listeners!
13.11.2025 17:17 — 👍 3 🔁 1 💬 2 📌 1
Metagenomics colleagues!
I'm looking for studies where both Illumina and ONT sequencing were performed on the same samples from soil, human, ruminent, and other sample types for comparison. Bonus if those studies include PacBio data.
Please help and share!
11.11.2025 20:21 — 👍 15 🔁 21 💬 6 📌 1
📢 Just released 0.5.0 of SciCommander, a tool to automatically track provenance information about shell commands, into HTML reports with the full provenance graph for every output. This version brings much improved usability and better looks.
github.com/samuell/scic...
#provenance #bioinformatics
06.11.2025 20:27 — 👍 3 🔁 2 💬 0 📌 0
1/ Everyone’s chasing AI.
But in bioinformatics, solid foundations still win.
Here’s why mastering the basics matters more than ever. 🧵
09.11.2025 14:45 — 👍 25 🔁 9 💬 2 📌 2
This has been a fantastic course, very well done @valentinapeona.bsky.social and @ritarebollo.bsky.social ! 🙌
Looking forward to continue diving into the field 😊
07.11.2025 15:50 — 👍 3 🔁 2 💬 1 📌 0
📢 Just released 0.5.0 of SciCommander, a tool to automatically track provenance information about shell commands, into HTML reports with the full provenance graph for every output. This version brings much improved usability and better looks.
github.com/samuell/scic...
#provenance #bioinformatics
06.11.2025 20:27 — 👍 3 🔁 2 💬 0 📌 0
At @embo.org #EMBOMobileGenome and want to connect with other TE researchers and follow the latest goings on?
Use #TEworldwide and #TEsky in your posts to be featured in the TEworldwide feed, which you can also find here:
bsky.app/profile/did:...
05.11.2025 05:14 — 👍 6 🔁 4 💬 0 📌 0
Screenshot from ChatGPT with me asking "Can you produce a nice compact ASCII art of the word SciCommander", and ChatGPT responding with an ASCII art saying ShiExpecker.
Our jobs are safe apparently 👀 #aifail #chatgpt
06.11.2025 11:12 — 👍 2 🔁 0 💬 0 📌 0
Time to kick off #EMBOMobileGenome for 2025! A great selection of speakers and posters on the agenda!
#TEWorldwide #TESky
04.11.2025 12:32 — 👍 15 🔁 1 💬 0 📌 1
@tobybarilbio.bsky.social and I are very excited to release MycoMobilome! A very extensive effort to discover, QC and annotate TEs across the fungal kingdom.
👉 Ready-to-use for your own genome with a simple tutorial!
👉 Metadata about TEs discovered in your genome!
👉 Contribute and get recognition!
29.10.2025 16:32 — 👍 43 🔁 15 💬 0 📌 0
YouTube video by BBC News
Sudanese survivors of el-Fasher siege tell the BBC about RSF brutality | BBC News
A horrific mass murder is unfolding in Sudan, where no one can see it. The RSF are murdering civilians in El Fasher, having finally defeated the Sudanese army forces holding out in the city. The BBC has managed to speak to some who escaped
www.youtube.com/watch?v=i7fC...
01.11.2025 07:14 — 👍 2446 🔁 1363 💬 59 📌 52
Make sure to register ASAP!
bsky.app/profile/jlst...
30.10.2025 18:50 — 👍 3 🔁 2 💬 0 📌 0
Used EMBL-EBI data resources to find, analyse, or archive your data? 🧬
Now’s your turn: tell us how you’ve used them + why they matter.
It takes 15 mins and helps keep these services open and free for all.
👉 tinyurl.com/bdf73zpp
Closes 16 July
#opendata #FAIRdata
17.06.2025 20:00 — 👍 2 🔁 4 💬 0 📌 0
The @scikit-learn.org docs are such a nice overview of the common types of learning in classical machine learning! A great visual overview and guide for newcomers.
scikit-learn.org
25.10.2025 22:32 — 👍 4 🔁 0 💬 0 📌 0
Morning coffee by the Rea river. Bioinformatician working at ICL.
Group Leader at Max Planck Institute of Molecular Genetics
https://www.molgen.mpg.de/fueyo-lab
Gene regulation | Transposons | Human embryo development
About TEs, IFN, senescence with a zest of ML
FR -> LU -> WA -> FR
🇵🇹 Staff Scientist @probstlab.bsky.social
(@unidue.bsky.social - 🇩🇪). Microbial genomics in the One Health context, biogeochemistry of cave microbiomes, alga-microbe symbioses.
The Earth BioGenome Project (EBP), a moonshot for biology, aims to sequence, catalog, and characterize the genomes of all of Earth's eukaryotic biodiversity over a period of ten years.
🌲Keep up with all EBP updates: https://linktr.ee/earthbiogenomeproject
Here for #bioinformatics / #computationalBiology of #Genomics, #Oncology and #Virology. Also loves #dataViz and open-source software.
Bluesky account of the Trono Lab at #EPFL to share our science on #transposons #epigenetics #KZFPs and #evolution Account run by lab members.
Keen on fungal genetics, fungicide resistance, phenomics, genomics, image analysis, epigenetics, epistasis, pleiotropy, host-pathogen interaction, TEs.
Infectious Disease Genomics, Environmental Microbiology, all things bugs and viruses.
IGTP, Catalonia, Spain.
Working on the UCSC Genome Browser since 2002, SARS-Cov-2 phylogenetics since 2020. Opinions my own not employer's. she/her
postdoc @trono-lab.bsky.social at EPFL🇨🇭// Future PI at @igbmc.bsky.social 🇫🇷 // Fascinated in transposons 🤘 and embryogenesis 👶
Future Lab: https://orspf.github.io/Rosspopoff.Lab.io/
We want to understand how pathogens adapt and cause diseases. Also passionate about TEs, pangenomes & population genomics, bioinformatics and conservation genomics.
Professor of Evolutionary Genetics @ University of Neuchatel 🇨🇭
Hobbies: 👧🏻👧🏼🏔️🏕️
Iranian-Scottish Londoner lost in the East, trying to get his head around scientific data and publishing
We’re the European Centre for Disease Prevention and Control. We aim to strengthen EU’s defences vs infectious diseases. Here to promote public health.
Web Design Museum exhibits thousands of screenshots and videos of websites, apps, software, and Flash games from the 1990s to the 2000s.
Pathogen informatics and modelling http://bacpop.org
(Research group leader at EMBL-EBI - http://ebi.ac.uk/research/lees/)
A leading life science journal that champions high-impact research across all disciplines—from molecules to ecosystems. We offer innovative formats and collaborative editorial support to ensure your work achieves its full scientific impact.
