UCSC Xena

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New webinar series!
We're launching a quarterly introduction to Xena for bulk sequencing data webinar series

📅 First webinar: June 5, 2025
🕙 10am–12pm PT
🔗 ucsc-xena.gitbook.io/project/tuto...

More dates coming soon!

Yes! Available here: xena.ucsc.edu Let us know if you have any questions. You can also email us at genome-cancer@soe.ucsc.edu

Screenshot of the TCGA Breast Cancer (BRCA) on UCSC Xena with a dropdown menu open for the phenotype variable 'PAM50Call_RNAseq', highlighting the newly added GSEA (Gene Set Enrichment Analysis) option using a yellow box and arrow.

🚨 Cally Lin developed our well-loved #GSEA analysis on Xena, using tools from Avi Ma'ayan's lab! #nciitcr @theaacr.bsky.social
📍 Catch her poster at #AACR25
🗓️ Tues, April 29, 2–5 PM
📌 Section 46, Board 7
www.abstractsonline.com/pp8/#!/20273...
👤 Connect with Cally: www.linkedin.com/in/callylin

UCSC Xena poster up at AACR 2025 which highlights our single cell views

First day at #AACR25! Our poster is now up at Section 46 Board 17. Drop on by! www.abstractsonline.com/pp8/#!/20273... #nciitcr @theaccr

AACR 2025 logo

Excited to be at #AACR25! We have a poster on Sunday, April 27th 2pm - 5pm, Section 46 Board 17. Drop on by! www.abstractsonline.com/pp8/#!/20273... #nciitcr @theaacr.bsky.social

Xena logo plus a talk bubble saying 'See you at #AACR24'

Last day at #AACR24! Drop by our poster at Section 35 Board 1. www.abstractsonline.com/pp8/#!/20272... #nciitcr

Logo for Sidra Medicine

Dr. Bhat looked at the prognostic significance and immune infiltration patterns related to Claudin heterogeneity in pancreatic ductal adenocarcinoma patients www.abstractsonline.com/pp8/#!/20272... Find them tomorrow morning, April 10, Section 46 poster 4. @SidraMedicine #NCIITCR #AACR23

Aaron Shaykevich in front of his poster at AACR 2024 'Carbamazepine mediated SMARCA4 inhibition as a therapeutic target for KRAS-mutated CRC'

Check it out! Shaykevich, Dr. Maitra, et al explored carbamazepine-mediated SMARCA4 inhibition as a therapeutic target for #ColorectalCancer. Poster is this afternoon Section 27 Poster 18. www.abstractsonline.com/pp8/#!/20272...  #AACR24 @YUNews #NCIITCR

Logo for AACR Annual Meeting 2024 in San Diego

Check out research Xena enabled at #AACR24! Chayil Lattimore explored genomic differences in Black patients treated with chemoradiation for #HNSCC. Her poster is today 1:30-5:00p, Section 32 Poster 4. www.abstractsonline.com/pp8/#!/20272...  #NCIITCR @CaretiaJay19 @UFHealthCenter @CaRE2HEC @UFCTSI

Shaykevich (right) and Silverman (left) standing in front of their poster at AACR

Shaykevich, Dr. Maitra, et al researched intermediates of PRMT5/BRG1 as a combination therapy for #ColorectalCancer. Check it out this morning, April 8, at poster Section 13, Board 21. www.abstractsonline.com/pp8/#!/20272... #AACR23 @YUNews #NCIITCR

AACR 2024 poster on Telomere-related genes associated with clinical-pathological in pancreatic ductal adenocarcinoma

Check out @Erika__Curiel 's research at #AACR24 to identify a telomere-related gene signature for #PDAC. Find her this morning, April 9, Section 13 Poster 15. Xena helped enable this analysis! www.abstractsonline.com/pp8/#!/20272... #NCIITCR @Melendez_Zajgla @AACR @PCBIOLOGICAS @inmegen

Logo for AACR Annual Meeting 2024 in San Diego

Excited to be at #AACR24! We have a poster on Wednesday, April 10th 9am - 12pm, Section 35 Board 1. Drop on by! www.abstractsonline.com/pp8/#!/20272... #nciitcr