Eva-Maria Schentarra's Avatar

Eva-Maria Schentarra

@evaschentarra.bsky.social

Biotechnologist - PhD student @jungmannlab.bsky.social Enjoying the little things in life using #DNAPAINT πŸ”¬πŸ§¬ @mpibiochem.bsky.social @lmumuenchen.bsky.social @imprs-ml.bsky.social

54 Followers  |  75 Following  |  11 Posts  |  Joined: 22.01.2025  |  1.7323

Latest posts by evaschentarra.bsky.social on Bluesky

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🚨 2 Γ— PhD positions @EPFL! 🚨
Help us push the boundaries of fluorescence microscopy - DNA nanotech, custom optics & spatial omics in Lausanne πŸ‡¨πŸ‡­. Start Jan 2026. Send CV + motivation + 2 refs β†’ fschueder@ethz.ch
#PhD #Hiring #microscopy #SuperResolution #SpatialOmics #DNAPAINT #FLASHPAINT

31.07.2025 08:56 β€” πŸ‘ 20    πŸ” 19    πŸ’¬ 1    πŸ“Œ 1
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Congratulations to Ralf on your election as a new EMBO member:

❕Original press release from @embo.org : www.embo.org/press-releas...

03.07.2025 08:57 β€” πŸ‘ 14    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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Great science, great company and stunning views at our Lab retreat on Schloss Ringberg πŸ°πŸ§¬πŸ”¬. Big thanks to our guests Sabrina Simoncelli, Sebastian Kobold, Thomas SchlichthΓ€rle, @massivephotonics.bsky.social & students from the @lfmilles.bsky.social and @mlsb-borgwardt.bsky.social Labs for joining!

14.06.2025 18:31 β€” πŸ‘ 14    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Very excited to present our latest work: SPINNA, an analysis framework and software package for single-protein resolution data! πŸ–₯️🀩

We can directly quantify stoichiometry and oligomerization from super-res (DNA-PAINT, RESI) images!! 🧬🎨

07.05.2025 14:56 β€” πŸ‘ 30    πŸ” 12    πŸ’¬ 0    πŸ“Œ 0
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Spatial and stoichiometric in situ analysis of biomolecular oligomerization at single-protein resolution - Nature Communications Extracting quantitative information on biomolecular oligomerisation with high resolution remains a significant challenge. Here, the authors propose SPINNA, a framework that compares nearest-neighbour ...

Spatial and stoichiometric in situ analysis of biomolecular oligomerization at single-protein resolution

We are excited to present our latest work published in @natcomms.nature.com

www.nature.com/articles/s41...

07.05.2025 14:42 β€” πŸ‘ 43    πŸ” 17    πŸ’¬ 1    πŸ“Œ 3
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Nanobinders for Synaptotagmin 1 enable the analysis of synaptic vesicle dynamics in rodent and human models. Synaptic neurotransmission is a critical hallmark of brain activity and one of the first processes to be affected in neural diseases. Monitoring this process, and in particular synaptic vesicle recycl...

Excited for our latest work! We developed nanobinders for the luminal domain of Synaptotagmin 1 (calcium sensor for synaptic vesicles). Thanks among others to @verstrekenlab.bsky.social @opazo.bsky.social @meunierlab.bsky.social @volkerhaucke-lab.bsky.social www.biorxiv.org/content/10.1...

22.04.2025 09:27 β€” πŸ‘ 23    πŸ” 19    πŸ’¬ 2    πŸ“Œ 3
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IMAGING LIGAND-RECEPTOR INTERACTIONS AT SINGLE-PROTEIN RESOLUTION WITH DNA-PAINTπŸ”¬
Ever wonder how cells "talk"? It starts when ligands bind to receptors on cell surfaces. We have cracked the challenge of imaging small ligands on cell surfaces. #DNAPAINT #celltalk πŸ’¬
doi.org/10.1002/smtd...

10.04.2025 11:40 β€” πŸ‘ 20    πŸ” 6    πŸ’¬ 2    πŸ“Œ 2

Thanks to @eduardunterauer.bsky.social, @jekristina.bsky.social, @forna.bsky.social, @opazo.bsky.social and @carstenmarr.bsky.social for putting together this great step-by-step guide on how to achieve up to 30-color DNA-PAINT spatial proteomics at sub-15 nm resolution. πŸš€

07.04.2025 19:58 β€” πŸ‘ 6    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Cell Press: STAR Protocols STAR Protocols is an open access, peer-reviewed journal from Cell Press. We offer structured, transparent, accessible, and repeatable step-by-step experimental and computational protocols from all are...

One month ago today, I published my first paper with the @jungmannlab.bsky.social πŸ₯³
What better way to celebrate #MicroscopyMonday than with this STAR Protocol on SUM-PAINT spatial proteomic imaging: a guide for highly multiplexed DNA-PAINT imaging in neurons. star-protocols.cell.com/protocols/4066

07.04.2025 19:58 β€” πŸ‘ 9    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
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Polarity reversal of stable microtubules during neuronal development Neurons critically depend on long-distance transport orchestrated by motor proteins walking over their highly asymmetric microtubule cytoskeleton. These microtubules are organized uniformly in axons w...

My main PhD paper is on bioRxiv! πŸ₯³ We used motor-PAINT, expansion microscopy, and live-cell imaging of StableMARK to map out how the microtubule cytoskeleton reorganizes during neuronal development.
www.biorxiv.org/content/10.1...

09.02.2025 13:24 β€” πŸ‘ 37    πŸ” 7    πŸ’¬ 1    πŸ“Œ 0
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Γ…NGSTRΓ–M-RESOLUTION IMAGING OF CELL-SURFACE GLYCANS 🧬🎨🍬

The glycocalyx, our cells' sugar coat, holds secrets in immunology, cancer, viral infections, and more. Visualizing its molecular architecture was impossible… until now. #glycotime #microscopy

www.biorxiv.org/content/10.1...

10.02.2025 08:21 β€” πŸ‘ 316    πŸ” 101    πŸ’¬ 15    πŸ“Œ 13
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Whipped up a DNA-themed cake for the
@JungmannLab - sweet science at its finest! πŸ°πŸ”¬ #PhDlife

24.01.2025 13:44 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Do you know what I love most about my PhD @JungmannLab? Actually seeing the things I learned from biology textbooks come to lifeπŸͺ„. Check out this DNA-PAINT image of the Golgi, showing both cis (GM130) and trans (TGN38) faces together with peroxisomes. Happy
#FluorescenceFriday😊

24.01.2025 13:44 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

If you're curious about imaging more than 6 targets using DNA-PAINT, take a look at our recent publication on SUM-PAINT for high-throughput multiplexing

cell.com/cell/fulltext/…

09.08.2024 12:36 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Looking at this beautifully detailed neuron, stained for 9 different proteins using SUM-PAINT, feels like stepping into one of David S. Goodsell's paintings illustrating the crowded cellular environment. #FluorescenceFriday #phdlife @JungmannLab

09.08.2024 12:36 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Excited to attend my first ever conference on single molecule approaches to biology by @GordonConf in beautiful Maine!
Caught a fun 'Where's Waldo' moment in the hotel lobby - can you spot Ralf Jungmann and Luciano Masullo waving at me in the background? πŸ” @JungmannLab @l_masu

15.07.2024 15:34 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Happy Friday! To wrap up another exciting week of learning highly multiplexed DNA-PAINT in the @JungmannLab, here's a nice #cellfie of a rat hippocampal neuron stained for synaptic vesicle markers (Vamp2, VGlut1 and synaptotagmin), clathrin, neurofilament and peroxisomes.

14.06.2024 13:20 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

With this my MINFLUX chapter may has concluded for now, but this was just the kick-off to my journey into super-resolution microscopy as a PhD student @JungmannLab πŸš€

29.05.2024 17:07 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Uncovering kinesin dynamics in neurites with MINFLUX Communications Biology - A MINFLUX tracking study of a truncated kinesin-1 mutant in gently fixed primary rat hippocampal neurons revealed 8 nm substeps and a rotation of its head during the...

Here it is - fresh off the press. Tracking substeps of kinesin in mildly fixed neurons using MINFLUX πŸ”¬.
I am proud to see my master thesis in close work together with Otto Wirth finally published!

nature.com/articles/s4200…

29.05.2024 17:07 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Uncovering kinesin dynamics in neurites with MINFLUX Neurons grow neurites of several tens of micrometers in length, necessitating active transport from the cell body by motor proteins. By tracking fluorophores as minimally invasive labels, MINFLUX is able to quantify the motion of those proteins with nanometer/millisecond resolution. Here we study the substeps of a truncated kinesin-1 mutant in primary rat hippocampal neurons, which have so far been mainly observed on microtubules polymerized on glass coverslips. A gentle fixation protocol largely maintains the structure and surface modifications of the microtubules in the cell. By analyzing the time between the substeps, we identify the ATP-binding state of kinesin-1 and observe the associated rotation of the kinesin-1 head in neurites. We also observed kinesin-1 switching microtubules mid-walk, highlighting the potential of MINFLUX to study the details of active cellular transport. ### Competing Interest Statement S.W.H. is inventor on patent applications WO 2013/072273 and WO 2015/097000 filed by the Max Planck Society that cover basic principles and arrangements of MINFLUX, including single-molecule tracking. S.W.H. is inventor on patent application WO 2020/064108 submitted by the Max Planck Society that covers principles and arrangements of the phase/amplitude modulator for shifting the intensity minimum. S.W.H. is a cofounder of the company Abberior Instruments, which commercializes MINFLUX microscopes. The remaining authors declare no competing interests.

My first preprint as a joint first author together with Otto Wirth and I couldn't be more excited! πŸ“š πŸ”¬
Exploring kinesin with MINFLUX during my Master's thesis was a blast while working with such talented minds in the Hell Lab.

x.com/Stefan_W_Hell/… biorxiv.org/content/10.110…

16.12.2023 23:40 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

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