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Ben Pedigo

@bdpedigo.bsky.social

Connectomics, neuroscience, data science, open science | Scientist @AllenInstitute | Formerly @ JHU BME, UW, MSFTResearch | 🚲 🐦 πŸ”

89 Followers  |  188 Following  |  6 Posts  |  Joined: 18.10.2024
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Posts by Ben Pedigo (@bdpedigo.bsky.social)

From @bdpedigo.bsky.social: a super efficient, highly reliable, and very generalizable method for mesh structure classification, applied here to spine detection across basically every synapse onto a cell in the MICRoNS dataset.

20.02.2026 21:30 β€” πŸ‘ 13    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
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⏳ Less than 72 hours left to apply for our postbaccalaureate internship program!

πŸ§ πŸ“ˆ Please share with promising grads in your network!

Review our eligibility criteria and open positions: https://bit.ly/3N41tGK

09.01.2026 20:55 β€” πŸ‘ 2    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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Incorporating open connectomics data into teaching neuroscience Learn to analyze open neuroscience data and introduce dry lab modules into your existing classes at theΒ Incorporating Open Connectomics data into...

I will be co-teaching a summer course at Allen Institute on connectomics education please apply. Travel support, new connectomics data sets and learning directly from the scientists who built these datasets. Details here: alleninstitute.org/events/incor...

24.11.2025 01:53 β€” πŸ‘ 23    πŸ” 12    πŸ’¬ 0    πŸ“Œ 0
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TODAY at #SfN25 - join us for a nanosymposium exploring insights from the from the Machine Intelligence From Cortical Networks (MICrONS) Project.

πŸ“… Saturday, November 15
πŸ• 1:00–2:45pm
πŸ“ SDCC Room 30

15.11.2025 17:02 β€” πŸ‘ 5    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Don't miss our first talks at #SfN25!

Join us at #SfN25 for a nanosymposium exploring insights from the from the Machine Intelligence From Cortical Networks (MICrONS) Project.

πŸ“… Saturday, November 15
πŸ• 1:00–2:45pm
πŸ“ SDCC Room 30

12.11.2025 19:24 β€” πŸ‘ 5    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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GitHub - u1234x1234/pyspectra: Unofficial python interface to Spectra library; GPU accelerated eigenvalue / TruncatedSVD problems solving Unofficial python interface to Spectra library; GPU accelerated eigenvalue / TruncatedSVD problems solving - u1234x1234/pyspectra

this looks like it hasn't been maintained in a while, but maybe the timing matches what you're seeing compared to RSpectra? github.com/u1234x1234/p...

20.06.2025 04:13 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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randomized_svd

scikit-learn.org/stable/modul... this is also often quite fast, but you definitely found the go-to (sparse.linalg.svds). How much worse is it? I remember seeing a stackoverflow or github thread on this but I'm struggling to dig it up again

20.06.2025 04:10 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Great to see the MICrONS data out, congratulations to the huge team who created this amazing data!

If you have a scientific question about the data, there are resources available (including annotation and proofreading work) to help you! Submit a request to VORTEX: www.microns-explorer.org/vortex

10.04.2025 21:24 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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The mind is like a symphony - it works better when the activity is synchronized. Growing evidence suggests that inhibitory neurons work together to "gain control."

Learn more in this excellent review by Katie Moisse in @thetransmitter.bsky.social.

πŸ”— www.thetransmitter.org/connectome/i...

10.04.2025 19:03 β€” πŸ‘ 35    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
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How does the brain work?

Scientists are closer to the answer with the largest wiring diagram and functional map of a mammalian brain to date. 🧡

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09.04.2025 15:03 β€” πŸ‘ 315    πŸ” 80    πŸ’¬ 14    πŸ“Œ 21
car pushing through a crowd of people for no good reason at pike place

car pushing through a crowd of people for no good reason at pike place

Mayor Harrell today on Pike Place: "I have a vision for our connected waterfront and Pike Place Market as one of the greatest pedestrian experiences in the country – where market patrons, visitors from out of town, and downtown residents do not have to worry about vehicle traffic." 1/2

18.02.2025 21:15 β€” πŸ‘ 35    πŸ” 7    πŸ’¬ 1    πŸ“Œ 7
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Summer Workshop on the Dynamic Brain 2025 The Summer Workshop on the Dynamic Brain is an intensive, project-based residential course with a focus on the neurobiology of sensory processing, coding, and neural population dynamics.

Deadline to apply for the Summer Workshop on the Dynamic Brain is Feb. 1!

The 2025 Summer Workshop on the Dynamic Brain is an intensive, project-based residential course for graduate and postdoc researchers interested in developing their computation skills.

alleninstitute.org/events/summe...

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10.01.2025 20:12 β€” πŸ‘ 10    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Last day to apply!

07.01.2025 18:06 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Internship & Postbaccalaureate Programs Students and early-career professionals in lab research, biology, neuroscience, immunology, and others should apply for our internships and fellowships.

alleninstitute.org/careers/inte... Internships and Postbac opportunities open at the Allen Institute, applications close January 7th 2025. Great opportunity for anyone interested in life sciences research or science-support careers.

Spread the word!

16.12.2024 19:33 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 1
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The Kebschull and @rezakalhor.bsky.social labs are recruiting a joint postdoc for an exciting project at the interface of phylodynamics and neuroscience. Come join us at JHU BME. Spread the word, and contact us if you are interested. #hiring πŸ§ͺ🧠. More on www.kebschull-lab.org and below.

18.11.2024 13:01 β€” πŸ‘ 13    πŸ” 11    πŸ’¬ 0    πŸ“Œ 2

By popular demand @sngreenways.bsky.social is on BlueSky! Follow for the latest on making Seattle a great place to walk, bike, roll, and live.

19.11.2024 00:36 β€” πŸ‘ 22    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0
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Render of a spiny neuron in mouse visual cortex from www.microns-explorer.org

16.11.2024 00:14 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

This is a map of Seattle's streetcar network in 1941. Same hills.

15.11.2024 21:35 β€” πŸ‘ 53    πŸ” 16    πŸ’¬ 7    πŸ“Œ 1