Bianca Dumitrascu

We're looking for two postdocs to join us! Topic 1: interpretable diffusion models for multi-scale morphology + genomics data! Topic 2: generation and control of biomaterials! If interested, send me CV + 3 recommendation letters over email!

Our fantastic postdoc Lambda talking about her adventure to find multi-scale signals in spatial transcriptomics at CSHL Single Cell Analysis. Preprint coming out soon! 😊 🚀 🚲

An exciting collaboration with a wonderful team! Check out Kuba's tutorial!

This is really nice! Congratulations 🎉🎉

Congratulations! 🎉 Excited for your new adventure!

Latest from the lab: a review led by @jamesehammond.bsky.social on the evolvability of vertebral counts and the developmental processes that make it possible.

Congratulations Rory & James!

Thrilled to announce that I am looking for a Research Technician/Assistant to join my lab @imbavienna.bsky.social. Please consider applying if you’re enthusiastic about #devbio #stemcells #teamwork and excited to help shaping a new lab!

Thankful for any retweet! 🫶

imba.onlyfy.jobs/job/l6u2m980

Congratulations Kristina and happy for those lucky to join your group!

Congratulations Dr. Joy!

Thank you so much for the highlight and for the nice summary of our recent work!

Dr. Bianca Dumitrascu (bimidu.bsky.social) led a new study published in naturemethods.bsky.social on a computational pipeline linking spatial transcriptomics + mechanical forces in tissue development. Read more: bit.ly/4kCgT1q #CancerResearch #Mechanobiology #SpatialTranscriptomics #IICDColumbia

Some light yesterday at Chimamanda Ngozi Adichie's new book reading.

What a treat to be part of this effort! Congratulations @jcornwallscoones.bsky.social and team!

c) It aims to be replicable and robust, the code is meant to be used by experts and non-experts. We are excited to find out how the tool can be broken and improved! We found many gaps in the #generativeAi for bio methodologies which we hope we can address

b) It is the result of a collaborative effort with the Woappi Group who got us excited about wound healing. There are many directions to go from here, especially in the context of regeneration and cross species comparisons!

It's a particularly special project to me because:

a) It is our lab's first paper, led by my fantastic student Oz!

Patches: A Representation Learning framework for Decoding Shared and Condition-Specific Transcriptional Programs in Wound Healing Single-cell genomics enables the study of cell states and cell state transitions across biological conditions like aging, drug treatment, or injury. However, existing computational methods often strug...

Check out our newest preprint on #bioxiv. We developed Patches, a tool for extracting joint and condition specific signatures from scRNA-seq data in complex experimental designs like wound healing: www.biorxiv.org/content/10.1...

GitHub: github.com/Computationa...

Very excited about this first adventure in looking at regeneration! Thank you Maria and @smeetonlab.bsky.social for a fantastic first collaborative project :)