Intelligent Tool Orchestration for Rapid Mechanistic Model Prototyping: MCP Servers as AI-Biology Interfaces https://www.biorxiv.org/content/10.1101/2025.09.10.675105v1
15.09.2025 16:47 — 👍 1 🔁 1 💬 0 📌 0
@physicell.bsky.social
Voilà
16.01.2025 13:25 — 👍 3 🔁 0 💬 0 📌 0
I swear I thought @Physicell was the way of tagging... I am trying to modify the post now, but I am already a boomer...
16.01.2025 13:23 — 👍 0 🔁 0 💬 1 📌 0
A fun FYI: PhysiCell was first publicly presented in 2015, with first open source release in 2016.
So let's call 2025 our 10th anniversary! 🧪
15.01.2025 16:58 — 👍 10 🔁 6 💬 1 📌 1
At the #Hanami High Level Symposium, my friend and colleagues Adam Smelko is presenting our new @PhysiCell formulation that allows for stretchable cellular membrane! We are still working on this, but I hope we will be able to give you updates vero soon!
14.01.2025 11:02 — 👍 11 🔁 6 💬 2 📌 0
Our #PhysiBoSS tutorial is now available at Briefings in Bioinformatics: academic.oup.com/bib/article/.... Learn how to build #multiscale models with #Boolean intracellular signaling, without any code, using #PhysiCell Studio! Showing three simple examples, and an update of Ruscone's invasion model👇
08.11.2024 19:05 — 👍 25 🔁 7 💬 2 📌 0
PyData Osaka Organizer,
Bioconductor Community Advisory Board,
Software Carpentry Japanese Team,
無連想式2ストローク漢字入力方式T-codeユーザー
We build open-source infrastructure to package, share, and deploy #MCP servers for scientific applications.
🔗 GitHub: github.com/CrackingShells
🐣 Early-stage, hackathon-driven, and growing.
Postdoctoral researcher at Sapienza University of Rome
PhD bioinformatician focused on multi-omics data integration for cancer research, cutting-edge pipelines development, and new stories ✨
cell biologist with a passion for immunology & microscopy & tissue mechanics
mum, scientist, dancer, earth citizen
All about Computational Biology and HPC - from the dark side (yes, we have cookies!) BSCing!
International research centre devoted to curing #cancer and other diseases linked to #aging. @cerca.cat center, member of @bist.eu.
www.irbbarcelona.org
Love all things Math and Physics...😊 (he/him). www.compactmatter.com
L’Institut du #Cancer AP-HP. Nord - Université Paris Cité acteur majeur de la cancérologie en Ile-de-France. 🔬🦠
https://institutducancer-hopitauxnord-u-paris.aphp.fr/
PhD in Computational Biology | Disease Modeling 👩💻🧬💊
☀️ Greek in Oslo, Norway ❄️
Tenured Researcher on Computational Systems Biology
Institute for Integrative Systems Biology (@i2sysbio.bsky.social), @csic.es
visitor at @bsc-cns.bsky.social, @alfonsovalencia.bsky.social team
also at @arnaumontagud@fediscience.org
Mathematical Biologist
RiKEN Center for Brain Science, Fujita Health University, and NIPS, Japan | Former Post Doc UCLA | Krietman Fellow, Israel | M.S.-Ph.D. IIT Bombay, India
Promotes Research among Underprivileged in Indian Universities
MD-PhD student at Indiana University & Purdue BME | Pienaar Computational Systems Pharmacology Lab | Mechanistic modeling of nontuberculous mycobacteria lung disease | IU alum | Views mine
Research Associate, MathCancer Lab, Intelligent Systems Engineering Dept, Luddy School, Indiana University. Scientific computing/simulation, agent-based modeling, dynamical systems. https://rheiland.github.io/
Dad and husband spending most of my time thinking about cancer. Math modeler. Convergence Institute at Johns Hopkins. Postdoc.
Emergency management and critical action planning call for timely and accurate decision making in several, diverse applications with the goal to optimize economic, societal, or environmental impacts.
The AI-powered developer platform to build, scale, and deliver secure software.
BSC-CNS (Barcelona Supercomputing Center-Centro Nacional de Supercomputación) is the National Supercomputing Facility in Spain.
www.bsc.es
