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Amelia Barber

@ameliabarberphd.bsky.social

Junior group leader at the University of Jena (@uni-jena.de) CIFAR Azrieli Global Scholar Fungal pathoecology, antimicrobial resistance, and genome stuff. Always up for an adventure or bike ride. https://barber-lab.com

1,618 Followers  |  608 Following  |  70 Posts  |  Joined: 15.09.2023  |  2.0427

Latest posts by ameliabarberphd.bsky.social on Bluesky

Anyone looking for roommates for #Fungal26 in Asilomar?
I will participate and I am looking for someone to share a room for the week!

I'm a female PhD student, looking to share a room with another female. Please DM me if you'd like to team up with me πŸ˜„
Reposts appreciated!

04.12.2025 14:22 β€” πŸ‘ 6    πŸ” 10    πŸ’¬ 1    πŸ“Œ 0
Six smiling people stand in two rows in a seminar room. Each is holding a large piece of paper with drawing summarising the presentations of another group member.

Six smiling people stand in two rows in a seminar room. Each is holding a large piece of paper with drawing summarising the presentations of another group member.

Six smiling people are standing together outside, dressed in winter coats and hats. In the background is the Wartburg Castle.

Six smiling people are standing together outside, dressed in winter coats and hats. In the background is the Wartburg Castle.

Six smiling people sit around a table playing the board game Mycology

Six smiling people sit around a table playing the board game Mycology

Third lab retreat in the books! We once again headed to the city of Eisenach for two days of project presentations, soft skills workshops, and science discussions. We also played the beautiful Mycology board game!

25.11.2025 21:12 β€” πŸ‘ 11    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
Six smiling people stand in two rows in a seminar room. Each is holding a large piece of paper with drawing summarising the presentations of another group member.

Six smiling people stand in two rows in a seminar room. Each is holding a large piece of paper with drawing summarising the presentations of another group member.

Six smiling people are standing together outside, dressed in winter coats and hats. In the background is the Wartburg Castle.

Six smiling people are standing together outside, dressed in winter coats and hats. In the background is the Wartburg Castle.

Six smiling people sit around a table playing the board game Mycology

Six smiling people sit around a table playing the board game Mycology

Third lab retreat in the books! We once again headed to the city of Eisenach for two days of project presentations, soft skills workshops, and science discussions. We also played the beautiful Mycology board game!

25.11.2025 21:12 β€” πŸ‘ 11    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
Image of yeast spotted on an agar plate. Some grow well, others are dying.

Image of yeast spotted on an agar plate. Some grow well, others are dying.

We're looking for a PhD student! If you're interested in #fungal #genomics & #TEs, meiotic drive, or pathogens, please consider applying. The project is about toxin/antidote genes in the human fungal pathogen A. fumigatus. uu.varbi.com/en/what:job/...

19.11.2025 09:20 β€” πŸ‘ 20    πŸ” 29    πŸ’¬ 1    πŸ“Œ 0
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Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen - Nature Communications In this study, the authors analysed a large genomic dataset to trace how jumping genes shaped the global spread of a major wheat pathogen and reveal bursts of activity over decades that drove adaptati...

TEs aren’t just genomic parasites, they’re also engines of genomic novelty.

Our new study with ~2,000 Z. tritici genomes shows repeated TE mobilization waves during global expansion.

With @danielcroll.bsky.social & @guidopuccetti.bsky.social

🧬 www.nature.com/articles/s41...

#TEworldwide

12.11.2025 13:17 β€” πŸ‘ 67    πŸ” 34    πŸ’¬ 0    πŸ“Œ 1

@tobybarilbio.bsky.social and I are very excited to release MycoMobilome! A very extensive effort to discover, QC and annotate TEs across the fungal kingdom.

πŸ‘‰ Ready-to-use for your own genome with a simple tutorial!
πŸ‘‰ Metadata about TEs discovered in your genome!
πŸ‘‰ Contribute and get recognition!

29.10.2025 16:32 β€” πŸ‘ 43    πŸ” 15    πŸ’¬ 0    πŸ“Œ 0
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1/ Ever needed to annotate TEs in a fungal genome, but didn't know where to start?

We have released #MycoMobilome, a community-focused non-redundant database of transposable element consensus sequences for the fungal kingdom, constructed from >4,000 fungal genomes!

www.biorxiv.org/content/10.1...

29.10.2025 09:02 β€” πŸ‘ 64    πŸ” 37    πŸ’¬ 1    πŸ“Œ 2
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A great turnout for our latest Microverse Seminar! πŸ•πŸ”¬

@ameliabarberphd.bsky.social, Junior Group Leader #FungalInformatics, shared fascinating insights in her talk β€œFrom Ecology to Genomes: Unraveling Fungal Pathogenicity Across Scales.”

Lively discussions and great connections followed!

29.10.2025 08:02 β€” πŸ‘ 15    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
The heading reads, 'Congrats Phillip!!'. Below that, there is a four image grid from a zoom meeting and depcting a graduation mortarboard and 3 people/groups smiling and celebrating.

The heading reads, 'Congrats Phillip!!'. Below that, there is a four image grid from a zoom meeting and depcting a graduation mortarboard and 3 people/groups smiling and celebrating.

Congrats to the group's first PhD student, the newly minted Dr. Brassington!!

Phillip relocated back to Oceania in the period between submitting his dissertation and his oral defense, so we had to make do with a virtual defense, but I am still incredibly proud of him.

17.10.2025 14:34 β€” πŸ‘ 16    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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Homepage - 33rd Fungal Genetics Conference Visit our website to learn more.

Registration open for #Fungal26 genetics-gsa.org/fungal-2026/ at Asilomar.

16.10.2025 17:59 β€” πŸ‘ 24    πŸ” 17    πŸ’¬ 2    πŸ“Œ 2
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Population structure in a fungal human pathogen is potentially linked to pathogenicity - Nature Communications Genetic diversity between clinical and environmental fungal isolates of Aspergillus flavus is poorly studied. Here, the authors analysed genomic data from a global set of clinical and environmental A. flavus isolates and report that clinical prevalence is associated with population structure.

Population structure in a fungal human pathogen is associated with clinical prevalence

#Aspergillus flavus

@annemakerofhats.bsky.social β€ͺ@ameliabarberphd.bsky.social‬ @rokaslab.bsky.social

#fungi #infection #PopulationGenomics #mycology

16.10.2025 14:47 β€” πŸ‘ 9    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0

Very excited to see the final version of our kingdom-scale fungal genome defense manuscript out in @plosbiology.org !

This work has been a major project of @tbadet.bsky.social during his time in our lab.

We hope to stimulate much more exciting work on fungal TEs.

journals.plos.org/plosbiology/...

16.10.2025 08:46 β€” πŸ‘ 42    πŸ” 15    πŸ’¬ 0    πŸ“Œ 1

Massive congrats Michael!!! Also, Bsky leaves much to be desired - why did I not see this before today??

13.10.2025 14:25 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Open Positions ERC-funded project on the mechanism of horizontal transfer of entire fungal chromosomes PhD PostDoc

Want to understand how entire fungal chromosomes can be horizontally transferred?
Join us to unravel the mechanism/consequences of horizontal chromosome transfer in a fungal pathogen as part of an ERC-funded project. Postdoc/PhD positions available.
fungal-evolutionary-genetics.de/open-positio...

13.10.2025 09:42 β€” πŸ‘ 25    πŸ” 21    πŸ’¬ 0    πŸ“Œ 0

If you saw my talk on the population structure of #Aspergillus flavus at Fungal Genetics in 2024, you might have heard someone ask "how does Aspergillus oryzae fit into the picture?"
If so, you heard my answer was "wait and see--we're working on this exact topic"
Well, the wait is over! Preprint ⬇️

07.10.2025 19:50 β€” πŸ‘ 17    πŸ” 8    πŸ’¬ 1    πŸ“Œ 1

Wow, congrats Megan and great to have you closer to πŸ‡©πŸ‡ͺ!!

18.09.2025 20:21 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Open postdoc position in in my lab in Berlin @mpiib-berlin.mpg.de.

Join us to push the frontier in ancient microbial genomics. Please apply until Oct 17th. Reach out in case you have any questions.

www.mpiib-berlin.mpg.de/2193291/job_...

15.09.2025 08:03 β€” πŸ‘ 22    πŸ” 28    πŸ’¬ 1    πŸ“Œ 0

Fabio doing some excellent scicomm about his postdoc project in the group!

11.09.2025 20:28 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Commensal yeast promotes Salmonella Typhimurium virulence - Nature Commensal Candida albicans enhances the virulence and dissemination of Salmonella enterica subsp. enterica serovar Typhimurium.

Excited to share our new publication, out today in Nature! www.nature.com/articles/s41.... @kanchanj.bsky.social led this fascinating fungal-bacterial interaction project. We are grateful for our wonderful collaborators Brian Peters and David Underhill.

03.09.2025 16:32 β€” πŸ‘ 115    πŸ” 56    πŸ’¬ 19    πŸ“Œ 3

Just a few more days to apply! ⏰

27.08.2025 15:51 β€” πŸ‘ 17    πŸ” 15    πŸ’¬ 0    πŸ“Œ 0

I thought the Aspergillus fumigatus pan-genome was pretty wild when we started this project.

Aspergillus flavus said, "hold my beer..." Not only does it have a strong population structure with differences between environmental and clinical strains, only 58%of genes are conserved across the species!

22.08.2025 06:38 β€” πŸ‘ 9    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0

Really interesting work. Bottom line: re-annotate everything using the same pipeline for pangenome studies!

18.08.2025 17:11 β€” πŸ‘ 11    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0

A nice walkthrough on the limitations of generic slide titles and how assertive titles really help keep you on track and your audience following your desired narrative.

My group can attest that I agree πŸ’―% that slides should have a concrete summary statement as the title, with very few exceptions.

15.08.2025 15:39 β€” πŸ‘ 11    πŸ” 3    πŸ’¬ 0    πŸ“Œ 1

Aspergillus fumigatus reference strain Af293 carries a mycovirus that boosts heat+oxidative stress resistance and infection fitness. 😲πŸ’₯

I encourage you to check out Neta's thread and I'm delighted my group could play a small role in this exciting study!!

14.08.2025 13:40 β€” πŸ‘ 21    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0
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Phyling: phylogenetic inference from annotated genomes Phyling is a fast, scalable, and user-friendly tool supporting phylogenomic reconstruction of species phylogenies directly from protein-encoded genomic data. It identifies orthologous genes by searchi...

New #preprint from talented graduate student for a workflow we have been using for a while into a formal usage www.biorxiv.org/content/10.1...

06.08.2025 18:43 β€” πŸ‘ 30    πŸ” 12    πŸ’¬ 0    πŸ“Œ 0

It was wonderful having you visit! I enjoyed learning what the lab has been up to since I left and it was extra special that you could meet my group and hear about their projects.

02.08.2025 04:17 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Doctoral Researcher in the areas of Microbial Pathogens and Climate Change

New PhD position @uni-jena.de and at our #ClusterOfExcellence! Join @ameliabarberphd.bsky.social's group to study #ClimateChange & #FungalPathogens. Interdisciplinary training, vibrant research network & great working conditions. Apply by Aug 31: jobs.uni-jena.de/jobposting/a... @uni-jena.de

30.07.2025 07:14 β€” πŸ‘ 7    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
AI-generated drawing of a woman looking through a microscope with DNA and fungi drawn in the background. The text contains the same content as the bsky post.

AI-generated drawing of a woman looking through a microscope with DNA and fungi drawn in the background. The text contains the same content as the bsky post.

My group at is hiring a PhD student to explore how fungal pathogens that live in the environment will adapt their genomes, acquire new phenotypes, and perhaps even increased infectivity as a result of climate change. Please share!

More info and applications at @ jobs.uni-jena.de/vrbup

29.07.2025 15:41 β€” πŸ‘ 47    πŸ” 47    πŸ’¬ 1    πŸ“Œ 1
AI-generated drawing of a woman looking through a microscope with DNA and fungi drawn in the background. The text contains the same content as the bsky post.

AI-generated drawing of a woman looking through a microscope with DNA and fungi drawn in the background. The text contains the same content as the bsky post.

My group at is hiring a PhD student to explore how fungal pathogens that live in the environment will adapt their genomes, acquire new phenotypes, and perhaps even increased infectivity as a result of climate change. Please share!

More info and applications at @ jobs.uni-jena.de/vrbup

29.07.2025 15:41 β€” πŸ‘ 47    πŸ” 47    πŸ’¬ 1    πŸ“Œ 1

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