GenOuest

@genouest.bsky.social will be present at the BioHackathon 2025 organized by @elixir-europe.org, we are looking forward this week of collaborative work 👩‍💻👨‍💻🧑‍💻

🚨🚧🖥 As a reminder, the servers will be shut down today at 14h.🚨🚧🖥
Service is expected to resume :

Modern genome browsing in Galaxy with Jbrowse2

On Day 2 of European Galaxy Days, Anthony Bretaudeau presented 'Modern genome browsing in Galaxy with Jbrowse2'.
Read more: https://usegalaxy.eu/root?tool_id=jbrowse2

#genomics #jbrowse2 #EGD2025 #genome #galaxyproject #eosc #fair #genome_browsing #open_science

We were thankful for this musical break!
The Galaxy community is fun, join us!

@abretaud.bsky.social presenting JBrowse 2 that is now available in @galaxyproject.bsky.social!! 🎉🎊
Users can now visualize multiple tracks on a browser, with specific colors, metadata, and other features.
Go try it out 👈

#EGD2025

The Biodiversity Galaxy Lab: A Collaborative Hub with curated tools, workflows and training for FAIR and Reproducible biodiversity analysis

On Day 1 of European Galaxy Days, Solenne Correard presented The Biodiversity Galaxy Lab: A Collaborative Hub with curated tools, workflows and training for FAIR and Reproducible biodiversity analysis.
Read more: https://biodiversity.usegalaxy.fr/

#EGD2025 #workflow #biodiversity (1/2)

⚠️ Interruption du site web de la #SFBI (www.sfbi.fr) du 6 octobre 14h jusqu'à 8 octobre 14h ⚠️

ℹ️ Opération de maintenance de notre hébergeur ℹ️

@solenne-correard.bsky.social , a member of @genouest.bsky.social presented the Biodiversity Galaxy lab, now available on the French and EU instances 🎊💥
More updates to follow.
Check it out:
biodiversity.usegalaxy.fr

#EGD2025 @galaxyproject.bsky.social

What a way to start #EGD2025! 💥
@bebatut.bsky.social presenting the microbiology Galaxy lab and the work of the mixrogalaxy community.
Check out their preprint if interested 💡

Members of the @genouest.bsky.social team are on their way to the European Galaxy Days 2025!
Come say Hi to us 👋

🚀 ON RECRUTE : Ingénieur·e Développeur·se – DevOps (H/F) à Rennes ! 🚀

Projet : @atlasea.bsky.social
Lieu : @irisa-lab.bsky.social

Compétences recherchées :
🔹 Python/Linux
🔹 Web (JS, API REST)

💡 Intéressé·e ? Postulez & partagez !
#Recrutement #DevOps #Rennes #Tech #IRISA

This image presents the Microbiology Galaxy Lab, a platform dedicated to One Health and ecological integrity, illustrating how it connects humans, animals, and the environment through the analysis of DNA, RNA, proteins, and metabolites using 315+ tool suites and 115+ workflows. On the left, it highlights ecosystem dynamics and biodiversity, covering areas such as microbial diversity, interactions, ecosystem modeling, strain discovery, pathway analysis, population omics, and temporal dynamics. On the right, it focuses on health and disease, addressing topics like clinical microbiota, antimicrobial resistance, pathogen profiling (viruses, bacteria, fungi, protozoa), virulence assessment, dysbiosis analysis, abundance quantification, outbreak modeling, biomarker correlation, and host interaction. The lab also emphasizes citizen science, education, and 35+ tutorials, promoting accessibility and knowledge sharing in microbiology research.

Today is #InternationalMicroorganismDay, a chance to celebrate the invisible powerhouses shaping our health and ecosystems. With @galaxyproject.bsky.social, we're proud to support global research that decodes the secrets of microbes, from deadly pathogens to life-sustaining bacteria.

overview

after a long effort, gathering a lot of input from many people, we finaly put it all together:
Ten Common Misconceptions About Galaxy (and Why They Are Wrong!)
https://www.preprints.org/manuscript/202509.0823
Thank you very much to all people involved !

🎉 Galaxy has passed 21,000 citations on Google Scholar!
A huge thank you to the global community of researchers who use and advance Galaxy for open, reproducible science.

From the #EOSC #EuroScienceGateway sustainability report :
" @galaxyproject.bsky.social represents a high-impact, low-risk investment opportunity for funders, policy makers, and research institutions seeking to support open science and accelerate discovery." 💥
Full report : doi.org/10.5281/zeno...

🚀 It’s today!
Mini-symposium #BYTE-Sea at #JOBIM25 on biodiversity genomics 🧬

🗣️ Talks by J.Stiller, M.Muffato, Y.Nevers, E.Parey & roundtable to shape the future of the field

💻 Join us on Zoom: us02web.zoom.us/j/8418851908...

ℹ️ More info: www.atlasea.fr/en/mini-symp...

👉 See you there!
#genomics

@abretaud.bsky.social and @bebatut.bsky.social presenting @galaxyproject.bsky.social France during the @ifb-elixir-fr.bsky.social network presentation at @jobim2025.bsky.social !

Come check out the poster n*141, today, from 11:30 to 12:30 at @jobim2025.bsky.social on
“The Environmental Cost of Bioinformatics at @genouest.bsky.social” by Rémy Siminel and Stephanie Robin.
Co-authors : Errel Le Deun, Matéo Boudet and @abretaud.bsky.social

We have 3 posters at @jobim2025.bsky.social !
The second, by Pauline Le Corre on “MLOps best practices for bioinformatics” (n° 31), will also be presented on Tuesday from 5:30 to 6:30 PM.

Come check it out!

Co-authors : @abretaud.bsky.social & @Yann Le Cunff

At @jobim2025.bsky.social next week?

Check out Romane Libouban's poster (n°51) "Genome Annotation tooling in @galaxyproject.bsky.social : contributions of the #EuroScienceGateway project"
📆 Tuesday 5:30-6:30 PM
Let's connect!

Co-author : @abretaud.bsky.social

GenOuest and JOBIM logos

Exciting news!
🌟 This July, GenOuest will be at @jobim2025.bsky.social in Bordeaux!
📍 Are you heading to #JOBIM2025 too? Let us know, we can't wait to see you there and might even have some cool stickers for you! 😉
Stay tuned for updates on our selected poster presentations.
See you soon! 🚀