@jacquesdainat.bsky.social
PhD Bioinformatics, Bioinformatician at @IRD_fr previously @Alcediag_Alcen and @NBISwe @scilifelab @uppsalauni, Annotation Assembly Epigenetic Pipeline Software Reproducibility https://github.com/Juke34
📝 Pick a License, Not Any License
✍️ Paired Ends (Stephen Turner's blog)
🚀 AliNe v1.6.0 is out!
✨ Now featuring:
• Up to 20 alignment algorithms
• CRAM output support
• New parameter to filter unmapped reads
• Automatic TSV comparison table generated when statistics are enabled
github.com/Juke34/AliNe
📝 Scientific production in the era of large language models
✍️ Paired Ends (Stephen Turner's blog)
nf-core/proteinfamilies: A scalable pipeline for the generation of protein families academic.oup.com/gigascience/... 🧬💻🧪
27.01.2026 15:01 — 👍 3 🔁 1 💬 0 📌 0
BIOCONDA ... 😈😅
22.01.2026 15:40 — 👍 0 🔁 0 💬 0 📌 0
Want to customize your GitHub README/profile page? 🙂
This README playground by @amrei-bp is a great resource to experiment.
github.com/amrei-bp/rea...
Really liking the idea and output of GAQETv2 - such a cool tool for structural genome annotation QC!!
www.protocols.io/view/structu...
Glad to have contributed to this study describing a novel Tequintavirus infecting Salmonella enterica serotype Tennessee.
My first involvement in bacteriophage research!
#phages #bacteriophage
link.springer.com/article/10.1...
Glad to attend the @nf-co.re #Hackathon from Montpellier! Great collaboration, inspiring discussions, and lots of fun 🚀 #bioinformatics
24.03.2025 17:33 — 👍 4 🔁 2 💬 0 📌 0My latest #Nextflow pipeline has just been published in JOSS 🎉
15.03.2025 19:45 — 👍 2 🔁 2 💬 0 📌 0
📰 Vous n'avez rien compris au changement de licence Anaconda ? 🐍 On vous explique pourquoi et comment se mettre en règle :
https://bioinfo-fr.net/conda-et-le-piege-de-la-licence-anaconda
#bioinfofr #anaconda #conda
Super excited for the distributed nf-core hackathon! We've got 36+ local sites being organized in over 20 countries! Registration is now open!
04.02.2025 14:26 — 👍 4 🔁 2 💬 0 📌 0
list of banned keywords
🚨BREAKING. From a program officer at the National Science Foundation, a list of keywords that can cause a grant to be pulled. I will be sharing screenshots of these keywords along with a decision tree. Please share widely. This is a crisis for academic freedom & science.
04.02.2025 01:26 — 👍 27846 🔁 15745 💬 1272 📌 3656
Registration to our #rstats Summer School RaukR 2025 Beyond The Basics is open! Don't miss the opportunity to elevate your R skillset! #r #datascience #bioinformatics #NBISweden @scilifelab.se
20.01.2025 13:48 — 👍 7 🔁 4 💬 2 📌 0
I’m thrilled to join the first cohort of 2025 Nextflow Ambassadors! seqera.io/blog/welcome...
I'm still promoting #Nextflow and highlighting its incredible potential in #Bioinformatics, but with an Nextflow ambassador hat on now.It's good to be supported, thx @mribeirodantas.bsky.social @nextflow.io
NBIS is seeking a #Nextflow pipeline developer ( permanent position ) in Uppsala, Sweden. www.uu.se/en/about-uu/.... Come join us and don't forget to include your Github/Gitlab/developer profile.
10.12.2024 08:32 — 👍 4 🔁 2 💬 0 📌 0
29.11.2024 13:51 —
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#EDTA v2.2.2 is now available on #bioconda 🎉
26.11.2024 20:47 — 👍 0 🔁 0 💬 0 📌 0
Day 2 of training to explore ANVIO with @tomdelmont.bsky.social at IRD Montpellier: an incredibly enriching experience! 🚀 #Bioinformatics #ANVIO
20.11.2024 18:50 — 👍 1 🔁 1 💬 0 📌 0
Avoiding the pitfalls of Anaconda license changes: a practical guide
juke34.github.io/fix-anaconda...