Xavier Hernandez Alias

Here our next RNA Club!
📅 24/09/25
📍 @mpibiochem.bsky.social
We will hear great talks from Selay Kaya (Nedialkova lab), Pierfrancesco D'Orlando (Rad lab), Gesine Behrens (Heissmeyer lab), Christopher Kuhn (Conti lab) and Kathrin Halter (Carell lab)!
See you there!

Congrats for the poster prize at #EMBLProtein, Xavi @xavierheal.bsky.social‬
! Wonderful to dissect the translational response to metabolic shifts with time series of ribosome profiling and AI. Exciting multidisciplinary project. So glad to work with you and Danny Nedialkova on this.

Thank you!! Happy to be part of this multidisciplinary adventure!!! 😊😊

Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !

🚨🚨🚨

Please RT!

We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets.

Deadline: 30/09/25👇

Extremely vibrant and amazing science at the EMBO Fellows' meeting, thank you @embo.org for organizing! It is so exciting getting to know so many excellent scientists that share the same passion for research!!

Update of our protein outlier caller PROTRIDER. We now handle missing values, a widespread issue for mass spec where missing values are not a random -- and this improves outlier detection on non-missing data! Thumbs up to Daniela and George for the great work.
doi.org/10.1101/2025...

This year, the lab has a great representation at the #eshg2025: 3 talks, 2 posters, 1 spin-off stand ! 1/n

What a fun and amazing experience to be this year at the other side of the stage @pintofscience.de! 🙈
Thank you for organizing and everyone for participating. I think it was the most exciting and also toughest Q&A session ever! 😊
@mpibiochem.bsky.social @gagneurlab.bsky.social

Take you agendas for our next RNA club!
📅4th June 2025 15h
📍@www.helmholtz-munich.de
We will hear great talks from Patrick Schinke (@marsico-lab.bsky.social), Niklas Petzold (@sattler-lab.bsky.social), and Christoph Mueller-Hermes (Dueck's lab @tum.de). See you there!

Amazing conference on the application of AI in RNA biology! With great science and and better scientists. Thrilling share and discuss such exciting topics and to be part of this emerging field! @gagneurlab.bsky.social @mpibiochem.bsky.social

I am very happy to participate in this year's @pintofscience.de!! I will be giving a talk on AI and biology May 20th at the Keg bar. Don't miss this and other events, tickets are out!
@gagneurlab.bsky.social
@mpibiochem.bsky.social
@tum.de

Join us for our next Kipoi Seminar with Laura Martens, Gagneur lab, TUM @lauradmartens.bsky.social @gagneurlab.bsky.social @tum.de
🐕scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
📅Wed May 7, 5:30pm CET
🧬https://kipoi.org/seminar/
🦋kipoizoo.bsky

Ready for 4 days full of talks and posters on RNA and AI, in the beautiful Ascona! #rnaai

Sunsets from @mpibiochem.bsky.social 😍

On Wed., Pedro @pedrotomazdasilva.bsky.social talks about interpreting DNA Language models through nucleotide dependency analyses. Capturing functional interactions -maps like this one for an intron- and more: RNA structures, reg motifs,... preprint:
www.biorxiv.org/content/10.1...

Join us in our next #MunichRNA19F!
📍 @mpibiochem.bsky.social
📅 19/02/2025

We will hear amazing talks from Shuyao Sha (@kusterlab.bsky.social), @lauradmartens.bsky.social (@gagneurlab.bsky.social), @michaelkugler.bsky.social (@hopfnerlab.bsky.social), Marc Schmitt-Supprian.

Don't miss it! 🧬😀

🚨🚨🚨

If you're a bioinformatician who loves:

🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing
🚀 Collaborating and travelling

Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu-@crg.eu in Barcelona. Qs: www.transdevolab.com

Please RT! 🙏

Hey reg genomics folks, here is our little x-mas present: Flashzoi. Borzoi. Just as good. 3x faster. Thumbs up to @johahi.bsky.social for the great initiative, conception & implementation. Big thanks to Johannes Linder, David Kelley and colleagues to have created Borzoi and shared it freely.

Thanks Max!

Thank you @upf.edu @crg.eu for making my PhD journey so amazing! I am honored to have received the Extraordinary Award. And a special thanks to my PhD supervisors @martinschaefer.bsky.social and Luis Serrano.

Moltes gràcies!

Very happy to share our modeling of mRNA translation at the @SCB_iec Bioinformatics and Genomics!
@gagneurlab & Nedialkova lab @MPI_Biochem https://t.co/ie5HnWaBHQ

Tomorrow! 👇 https://t.co/HQ4G0Vx6Al

Beautiful sunsets from @MPI_Biochem 😍 https://t.co/PnjHhSmuBE

Ready for some days of exciting science @EESRNA! Looking forward to share our latest results from @MPI_Biochem @gagneurlab !! 😊 https://t.co/I9ORug4lK8

Don't miss the chance! Great lab and supervisor!⬇️ https://t.co/NhAXFDmyHK

Tomorrow! Happy to take part in this! 👇 https://t.co/hx8wmCnAEz

Looking forward to tonight! Happy to share my science in it!! 😊😍 https://t.co/N8bVSv0XrF

An extremely interesting work to take part in, and a great team effort! Exited to see how much DNA LMs can help understanding biology!! https://t.co/Jwi6VbnSDb

I am so happy to receive this award!! Thank you so much @UPFBarcelona
It is a great honour to share it with great colleagues from @CRGenomica 😍

And a special thanks to my great supervisors and mentors @lab_serrano @MartinHSchaefer for the exciting journey together! https://t.co/R7zTEJns9P