One Codex

Comprehensive and accurate bacterial isolate characterization using multi-locus sequence typing We’ve just released an updated MLST analysis that includes improved support for short and long-read sequencing data. In addition to these core improvements, we’ve also expanded our organism coverage…

Major updates to MLST analysis at One Codex: we’ve expanded to 100+ species, added fungal support, and integrated long-read sequencing compatibility.

Read more about our revamped characterization workflow: www.onecodex.com/blog/2026/01...

07.01.2026 14:15 — 👍 0    🔁 0    💬 0    📌 0

Researchers have created over 300k plots in One Codex since the launch of our data viz features 📊

We're adding lots of new functionality (including statistical analyses for alpha and beta diversity) to Custom Plots, and would love your input: what are the most common analyses you perform?

02.06.2025 13:17 — 👍 0    🔁 0    💬 0    📌 0

If you've used One Codex recently, you might have noticed our new Workflows page in the One Codex application got a fresh cost of paint over the last couple of months. 🧑‍🎨

But the ✨real magic✨ is coming soon: we’re about to roll out the biggest new feature ever on One Codex, so stay tuned! 🍿 🧬

27.05.2025 13:46 — 👍 0    🔁 0    💬 0    📌 0

GraphSNP: an interactive distance viewer for investigating outbreaks and transmission networks using a graph approach - BMC Bioinformatics Background Cluster and transmission analysis utilising pairwise SNP distance are increasingly used in genomic epidemiological studies. However, current methods are often challenging to install and…

Every couple of weeks we have a No Stress Journal Club® 😅, where one of us leads the team through a paper from the world of microbial genomics. And now, we'll start sharing some of these with you! First up, GraphSNP from Forde et al:

bmcbioinformatics.biomedcentral.com/articles/10....

26.05.2025 13:21 — 👍 1    🔁 0    💬 0    📌 0

Advancing Viral Metagenomics: Long-Read Support and Customizable Reporting to our Twist Panel Analysis One Codex’s updated bioinformatics solution for the Twist Viral Panels now supports Oxford Nanopore and PacBio, improves viral detection sensitivity, and offers customizable reporting thresholds to…

Our bundled analysis for Twist's Viral Research panels just got a big update! We now support long read sequencing data from ONT and PacBio, as well as an even easier analysis experience and additional advanced bioinformatics outputs. Check out the blog post: www.onecodex.com/blog/2025/04...

22.05.2025 15:16 — 👍 0    🔁 0    💬 0    📌 0