Dan Søndergaard's Avatar

Dan Søndergaard

@dansondergaard.bsky.social

HPC senior consultant @ GenomeDK, Aarhus University. Bygger infrastruktur til bl.a. sundhedsdata. Far til to.

68 Followers  |  98 Following  |  18 Posts  |  Joined: 25.11.2024  |  2.5514

Latest posts by dansondergaard.bsky.social on Bluesky

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Søndagssurdej ♥️ #surdej

31.08.2025 12:09 — 👍 2    🔁 0    💬 0    📌 0

The trailing space didn't make a difference for me. But yes, ss is the way to go! The equivalent command with ss is:

ss -n -t src :2049

Sweet :-)

22.08.2025 10:18 — 👍 2    🔁 0    💬 0    📌 0

Not as robust as it may show clients with a (randomly chosen) port of 2049 :-)

22.08.2025 06:40 — 👍 0    🔁 0    💬 1    📌 0

TIL that if `showmount -a` won't show the clients connected to your NFS server (with NFSv4), netstat is your friend:

netstat -anp | grep '<NFS SERVER IP>:2049' | grep ESTABLISHED

#linux #sysadm #hpc @almalinux.org

21.08.2025 10:52 — 👍 1    🔁 1    💬 1    📌 0

TIL that the only way to get rid of useless systemd-rc-local-generator log output is with this:

systemctl --global mask rc-local.service
echo -e '#!/bin/bash\nexit 0' > /usr/lib/systemd/system-generators/systemd-rc-local-generator

#systemd #linux #sysadm #hpc

20.08.2025 10:47 — 👍 0    🔁 1    💬 0    📌 0
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First-Of-Its-Kind Cell Transplant Brings a Cure For Diabetes Closer A patient with type 1 diabetes has begun producing his own insulin after receiving a transplant of pancreatic cells.

A patient with type 1 diabetes has begun producing his own insulin after receiving a transplant of pancreatic cells. For the first time, islet cells have been edited so they wouldn't be rejected by the patient, removing the need for immunosuppressant drugs.
www.sciencealert.com/first-of-its...

17.08.2025 23:44 — 👍 1622    🔁 558    💬 48    📌 93
GenomeDK

Catch up on the latest updates from the GenomeDK infrastructure, including:

🔍 The AU HPC review process — we need your support!
💾 A 10 PB storage expansion is now live and available to all users
📅 Important notice: All DeIC GenomeDK projects will end on April 1, 2026

genome.au.dk/news/newslet...

12.08.2025 11:40 — 👍 1    🔁 0    💬 0    📌 0
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At GenomeDK, we’re proud to support Danish research and teaching with powerful, flexible computing infrastructure. One of the areas where this really makes a difference is in hands-on teaching environments.

Read more here:

genome.au.dk/news/ngs-cou...

10.07.2025 12:25 — 👍 2    🔁 1    💬 0    📌 0
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Postdoctoral Fellowship in Multivariate Statistical Machine Learning and Integrative Genomics - Vacancy at Aarhus University Vacancy at Center for Quantitative Genetics and Genomics, Aarhus University

Do you want to explore how genetics, molecular data, and health records can be integrated to uncover the biology of complex traits and diseases? Join us as a Postdoc in Statistical Genetics!
📍 Center for Quantitative Genetics and Genomics, Aarhus Uni
📅 Start: Sep 1, 2025
tech.au.dk/en/about-the...

15.05.2025 12:11 — 👍 0    🔁 1    💬 0    📌 0
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Postdoctoral Fellowship in Multivariate Statistical Machine Learning and Integrative Genomics - Ledig stilling på Aarhus Universitet Ledig stilling ved Center for Kvantitativ Genetik og Genomforskning, Aarhus, Aarhus Universitet

You will:
🔍 Develop multivariate and Bayesian models for complex trait genetics
🧬 Integrate large-scale genomic and clinical data
🧠 Apply and extend advanced multivariate modeling techniques
💻 Contribute to projects on cardiometabolic and psychiatric conditions

14.05.2025 14:29 — 👍 1    🔁 1    💬 1    📌 0
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Tenure-Track Assistant Professor / Associate Professor in Bioinformatics at Aarhus University, Denmark - Vacancy at Aarhus University Vacancy at Department of Molecular Biology and Genetics - BiRC - Bioinformatics Research Center, Aarhus University

Come join us at the Bioinformatics Research Centre at Aarhus University. Tenure track/associate professor position available with application deadline June 1, 2025. Application details here: international.au.dk/about/profil...

04.05.2025 09:26 — 👍 7    🔁 9    💬 0    📌 0
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Are you an evolutionary/population geneticist in Denmark? The EPIC conference is back and it will take place on 11-12 August 2025 in Aarhus. Come along for two days of great talks and networking! #EPICdk25

Hosts: @molbiolau.bsky.social & @popgendk.bsky.social
Register now at: popgen.dk/epic/

24.04.2025 13:51 — 👍 4    🔁 3    💬 0    📌 1
GenomeDK

🌊💨 Bubbles meet turbulence!
Using GenomeDK’s HPC, Aarhus University researchers simulated bubble–surface interactions — key to energy optimization in the maritime sector ⚓️🔬

Dive into the full story 👉 genome.au.dk/news/bubble-...

#HPC #FluidDynamics #MaritimeTech #EnergyEfficiency #GenomeDK

08.04.2025 07:10 — 👍 2    🔁 0    💬 0    📌 0
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Postdocs in Epidemiology or Statistical Genetics at The Pioneer Centre for SMARTbiomed - Vacancy at Aarhus University Vacancy at Department of Public Health - NCRR - National Centre for Register-based Research, Aarhus University

We're hiring Pioneer Fellow Postdocs!!

Join us at the Pioneer Centre for SMARTbiomed to develop innovative methods in epidemiology, biostatistics, and statistical genetics, working with big biomedical data.

international.au.dk/about/profil...

#StatGen #Epi #Postdoc #SMARTbiomed

11.03.2025 15:10 — 👍 21    🔁 12    💬 1    📌 0
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Two Faculty positions (Associate Professor or Tenure-Track Assistant Professor) at Aarhus University, Denmark. Molecular Medicine and/or Molecular Biology - Ledig stilling på Aarhus Universitet Ledig stilling ved Institut for Molekylærbiologi og Genetik, Aarhus Universitet

We are recruiting two new colleagues at the department of Molecular Biology. Come join us! Denmark is a great place to live, science funding is really good, and the people are nice. Message me if you have any questions

mbg.au.dk/aktuelt/ledi...

17.02.2025 09:55 — 👍 14    🔁 9    💬 2    📌 0
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Tidligere overvismand kritiserer DR-dokumentar: »Enten er det bevidst manipulation, eller også er det grov uvidenhed« Kritikken er haglet ned over Danmarks Radio efter en ny dokumentar ifølge flere sider har tegnet et billede af, at Danmark har tjent store beløb på kryolit fra Grønland. Tidligere overvismand mener, a...

Tidligere overvismand Hans Jørgen Whitta-Jacobsen mener, at det er helt legitimt at rejse spørgsmål om Danmarks kolonitid, men “hvis vi skal lave de her regnestykker, skal de laves retvisende og sandfærdigt i stedet for groft misvisende og grænsende til det manipulerende.”
finans.dk/okonomi/ECE1...

12.02.2025 12:38 — 👍 94    🔁 12    💬 4    📌 1

The 12th GenomeDK newsletter is now available in your favourite browser!

A few highlights:

📘 Workshop series for getting started with HPC on GenomeDK is open for sign-up.
🖥️ Announcing the GenomeDK Desktop
🪴 Growing our storage capacity in 2025

Read more here: genome.au.dk/news/newslet...

28.01.2025 14:24 — 👍 1    🔁 0    💬 0    📌 0
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Join us in this series of GenomeDK workshops where we guide you from a general introduction to advanced usage. Each workshop targets increasing difficulty levels, so you can join the sessions that fit you best.

genome.au.dk/news/worksho...

Please circulate to anyone who may be interested!

16.01.2025 10:50 — 👍 0    🔁 0    💬 0    📌 0
The Pioneer Centre for SMARTbiomed The Pioneer Centre is anchored at Aarhus University and will be a collaboration of researchers from Aarhus University, University of Copenhagen, and University of Oxford.

The Pioneer Centre for SMARTbiomed will leverage large-scale, multimodal biomedical data combined with focused innovation in statistical and computational methods including machine learning to advance our understanding, treatment, and prevention of human disease.
Learn more about us: smartbiomed.dk

14.01.2025 09:19 — 👍 6    🔁 4    💬 0    📌 0

Congratulations, Micah!

10.01.2025 11:38 — 👍 1    🔁 0    💬 1    📌 0

I'd be happy to drop by, we also provide more in-depth workshops/tutorials. And yes, you *may* be billed by the faculty, but at very discounted prices (<50%). Let's have a chat after the Christmas break!

22.12.2024 18:28 — 👍 1    🔁 0    💬 1    📌 0

Nice! That sounds like a pretty ideal scenario for GenomeDK. We currently store ~20 PB data of all sorts, so your use-case is pretty normal in our world.

22.12.2024 18:25 — 👍 1    🔁 0    💬 1    📌 0

I assume your group is with Faculty of Health? If so, it is pretty much free, actually. The prices on the website are for "external" users, but as a HE group you're "internal" :-)

22.12.2024 18:22 — 👍 0    🔁 0    💬 1    📌 0
GenomeDK

I'm at GenomeDK (genome.au.dk), but you probably already checked it out. Sounds like it would fit your use-cases quite well though (not knowing anything abut brain imaging data whatsoever).

22.12.2024 17:45 — 👍 1    🔁 0    💬 1    📌 0

Sounds like a sweet setup! Do multiple lab members use the R server, or is it just for you?

22.12.2024 17:42 — 👍 2    🔁 0    💬 1    📌 0

Also, super curious about your setup ;-)

22.12.2024 06:08 — 👍 2    🔁 0    💬 1    📌 0

So you self-host data storage for your lab’s research? Why not use some of the university-provided solutions? (I know it’s less fun!)

22.12.2024 06:03 — 👍 2    🔁 0    💬 2    📌 0
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Very excited (and a bit nervous) to announce that I will be hiring two Postdocs for my new group(!) in Copenhagen to study the Neanderthal and Denisovan DNA which survives in present-day humans. Retweet will be much appreciated :)

Link for application:
candidate.hr-manager.net/ApplicationI...

02.12.2024 12:46 — 👍 417    🔁 287    💬 9    📌 9

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