Comunidad de Desarrolladores de Software en Bioinformática

Apply to be an Opportunity Scholar at posit::conf(2026) in Houston!
We’re offering 40 full-support scholarships for underrepresented groups in data science. Includes: 🎟️ Conference+Workshop pass 🏨 Hotel stay ✈️ Travel reimbursement
Apply by March 13: posit.co/blog/apply-t...
#positconf2026 #rstats

La página que contiene el formulario para aplicar al programa de campeonas/es está experimentando problemas.

Extendemos el llamado hasta el lunes 23.

Si el problema persiste buscaremos una alternativa.

Gracias a todas las personas que nos avisaron y que quieren aplicar! 💜🙏

#RStats
@rstats@a […]

Discovered miRBaseConverter (Bioconductor) this week and thought it was cool 🙌

It translates miRNA names across miRBase versions and retrieves sequence info programmatically, making dataset integration smoother.

Already saving me future headaches.
Thanks to Taosheng Xu 👏

Talk submission video for Posit Conf 2026 #RStats

«Organizing your data science team to be efficient, adaptive to new developments, and resilient to turnover rate»

URLs:
1. lcolladotor.github.io/bioc_team_ds/
2. research.libd.org/rstatsclub/
3. github.com/LieberInstit...

#OpenSource #Bioconductor

La página que contiene el formulario para aplicar al programa de campeonas/es está experimentando problemas.

Extendemos el llamado hasta el lunes 23.

Si el problema persiste buscaremos una alternativa.

Gracias a todas las personas que nos avisaron y que quieren aplicar! 💜🙏

🚨 Último día 🚨
Hoy 20/2 cierra la convocatoria del Programa de Campeon(a|e)s
12 meses de mentoría, formación y comunidad en software científico y ciencia abierta, con foco en América Latina y en español.
⏰ Aplicá hoy 👉 champions-program.ropensci.org
Sumate a la próxima cohorte 💙
#RStats

If you study microbiome Time series (gut, soil or mangroves -> like me) you want to know this...

#miaTime (new on #Bioconductor3.22) gives you:

🟢 Divergence
🟢 Short-term change
🟢 Bimodality

Thanks to the devs: @antagomir.bsky.social @tuomasborman.bsky.social

#RStats #Microbiome #Bioconductor

Today I had the opportunity to teach as a guest instructor in a bioinformatics course at #LCG-UNAM 👨🏻‍💻.
We built academic websites with #postcards (thanks @seankross.com!), inspired by @hadley.nz and @jtleek.bsky.social.
Thanks to Dr. @lcolladotor.bsky.social for the invitation! 🚀

#RStats

Looking forward to contributing to a course session this week at #LCG-UNAM 👨🏻‍💻
Grateful for the opportunity to learn through teaching! 😊

@lieberinstitute.bsky.social @jhubiostat.bsky.social

lcolladotor.github.io/rnaseq_LCG-U... is looking ready for next week!

We'll have the most guest presenters ever this year with @meli-mq99.bsky.social @gabrielramirezv.bsky.social @mariagtac.bsky.social & @daiannaglez.bsky.social 🙌🏽

See you soon at LCG-UNAM! 🇲🇽

#RStats @bioconductor.bsky.social

Last Friday, Irving Jair García López became the latest PhD graduate of the #RegRNALab. His work focused on characterising lncRNAs in response to light stress in Arabidopsis 🌓🌱 and was jointly advised by Stewart Gillmor.

Huge congratulations Dr García López!!! 🎉🎓

Framed LEAF certificate awarded to the RegRNALab

Woman in lab using pipette

Woman in lab using pipette

The #RegRNALab is now LEAF certified! LEAF, is an internationally recognised green lab accreditation that aims to build a culture of sustainable practice in laboratories around the 🌎♻️ We are currently just 🥉 but we have our eyes on🥇! Props to Billi Ilkovski & the whole team for getting this done!

I’m happy to share a preprint I contributed to, analyzing the evolutionary “fingerprints” of protein-coding genes in RNA viruses. Surface-exposed proteins from enveloped viruses show patterns consistent with relaxed purifying selection rather than adaptive evolution.

Are you working on ancient plant DNA? 🌿

We are organising a symposium on Ancient plant genomics at #SMBE2026 in beautiful Copenhagen 🇩🇰

Join Nathan Wales, Shuya Zhang, Marcela Sandoval Velasco, me, and our fantastic speaker Logan Kistler from the Smithsonian Institution.

Help us spread the word!

I’ve just published {typeR}, a small R package that lets you simulate live typing. It prints code
To install:
devtools::install_github("fgazzelloni/typeR")

If you teach or demo R, I’d love your feedback on how it works for you. #rstats #rpackages

An AI generated image showing a frog, a butterfly, plants and a cartoonish DNA molecule, with text in spanish, advertising an opportunity to get a masters degree studying environmental DNA in Mexico

Buscamos personas interesad@s en estudiar la biodiversidad de eucariontes con métodos basados en DNA ambiental #eDNA.
Consulta la convocatoria de maestría en ECOSUR (México): www.ecosur.mx/posgrado/con...
Para más información contacta a Dra. Eugenia Zarza: eugenia.zarza@ecosur.mx 🧪🌎🧬🐟🐜🪲🪱🍄🐭

So...a week ago I finally got my PhD (with honours 🥳).
It has been a wild ride & I'm so happy to finish it with such great commentaries & congratulations.
I'm beyond grateful for all that I've learnt so far & the people I've met.
And overall I'm SO excited for what's next to come 💜

New preprint led by Ellie Tong! Using phages targeting the inner core of LPS in PAO1, we found that when bacteria evolved resistance to one phage via genomic deletions, they became vulnerable to another revealing a resistance trade-off. #Microbiology #PhageTherapy
www.biorxiv.org/content/10.6...

Gut Microbiota Composition in Adolescents From Mexico City, Associations With Nutritional and Socioeconomic Factors: Results From a Pilot Study This study analyzed the gut microbiota composition of 95 adolescents and its relationship with body mass index, dietary habits, and socioeconomic status using 16S rRNA sequencing (V3-V4). The dominan...

New paper out! Gut microbiota in Mexican adolescents is shaped by BMI, diet, and socioeconomic status.
Obesity was linked to lower microbial diversity and higher Bacteroidetes and sugar-rich diets, and lower SES were associated with potential pathogens.
onlinelibrary.wiley.com/doi/10.1002/...

YouTube video by Leonardo Collado Torres [2020-04-03] How to ask for R help by creating a small reproducible example (edited on 2026-01-27)

I re-edited this 2020 video using Adobe Premier Pro's features for removing filler words, pauses, and text-based editing. In total it went down from 20:53 min to 12:41. I hope that you get to (re-)enjoy it ^_^.

@jennybryan.bsky.social

#RStats #reprex #reproducibility #JHPCE

youtu.be/LfUFxHFhXTE

[2025-10-16] What Makes a Good Data Visualization?

Here's a teaser video of @christinezhang.bsky.social's guest lecture for the "140.776 Statistical Computing" 💻 course that I instructed this year at @johnshopkinssph.bsky.social

Watch Christine's full guest lecture for free at youtu.be/SeLucCb05Dk

In remembrance of Peer Bork  | EMBL EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.

very sad news. Peer Bork was one of the leaders of our field, a wonderful scientist, and he's much too young to be gone. www.embl.org/news/embl-an...

Cynthia @cynthiasc.bsky.social pasó de alumna de un curso de la CDSB a trabajar con uno de nuestros co-fundadores por 3 años en EEUU. Ahora Cynthia está de regreso en México 🇲🇽 y disponible para dar cursos, colaborar, proyectos como consultora, y mucho más

lcolladotor.github.io/es/authors/c...

YouTube video by Leonardo Collado Torres [2025-07-18] Plots in Python with seaborn and plotnine

Hot take: ggplot2 is better than any plotting option available in Python-- but I discuss a couple options in Python at an R Stats Club session @libdrstats.bsky.social linked below. I personally use plotnine, since it's essentially a port of ggplot2 for Python.

youtu.be/xK9UNcOfjnI

Patterns of neural activity in prelimbic cortex neurons correlate with attentional behavior in the rodent continuous performance test - Translational Psychiatry Translational Psychiatry - Patterns of neural activity in prelimbic cortex neurons correlate with attentional behavior in the rodent continuous performance test

Happy to share that our paper characterizing PrL dynamics during sustained attention is finally out. This work was a collaboration between the @martinowk.bsky.social and Greg Carr groups at @lieberinstitute.bsky.social . www.nature.com/articles/s41...

#Calicumimaging #miniscopes #rCPT #PrL

I just completed my first radio 📻 interview ^_^

You'll be able to listen to it next Friday or so at www.iheart.com/podcast/269-.... Thanks Clau from iHeartRadio Miami's "Estamos Contigo" podcast for reaching out!

I'll be talking in Spanish about our recent #HabenulaLIBD 📜

bsky.app/profile/lcol...

Para preparamos para los carteles Alberto Issac Aguilar Hernández de la UAEM nos plática de como diferenciar entre tipos de dinámicas determinists y estocásticas

#RedMexBioMate

Acá va en español 🇲🇽
--- o ---

"¡Estamos orgullosos de anunciar que nuestro artículo ‘Análisis Transcriptómico de la Habénula Humana en Esquizofrenia’ es el artículo de portada de la edición de noviembre del American Journal of Psychiatry!" 🧠 #HabenulaLIBD #snRNAseq #Habénula doi.org/10.1176/appi...

Excited to share that the second project from my time at @lieberinstitute.bsky.social with @lcolladotor.bsky.social is now published! This was such a rewarding collaboration to be part of. 💡🧠
Huge congrats to @lahuuki.bsky.social and all co-authors!

Poster-Session-Epigenomics-Sciences-Cluster

¡Hola! 👋 Avances en nuestra investigación sobre la habenula humana, clave en motivación y estrés.
Usamos single-cell, epigenomics y spatial data para estudiarla.
Presentado en el 2025 Epigenomics Sciences Symposium (JHU). 🧠✨
#SingleCell #Epigenomics #LIBD