The BioImage Archive

Our group @ebi.embl.org‬ is a host for the ARISE2 MSCA-funded post-doc fellowship, in collab with @bioimagearchive.bsky.social‬ and ‪@scilifelab.se (esp. A Mezger and S. Giacomello) to support the development of next-gen spatial data infrastructures. Apply by 30/09
www.embl.org/training/ari...

We are at #mmc2025! Come to our booth to say hi and learn about the Data Steward Training Program 👋

Ever wished your AI model could test itself before you download it? Now it can.

AI4Life has a new model evaluation platform that connects models from the BioImage Model Zoo to real data in the @bioimagearchive.bsky.social.

Details here 👉 ai4life.eurobioimaging.eu/the-ai4life-...

📣 We are pleased that @natureportfolio.nature.com recommends The BioImage Archive for depositing bioimaging data, as part of their cross-journal microscopy reporting pilot.
www.nature.com/articles/s41...
Here is to improving transparency and reproducibility in light and fluorescence microscopy 🔬!

Graphics image showing webinar at EMBL-EBI about Open FAIR data: the role of public data archives. The webinar will run on 25 June 2025 at 14:30 BST. The speakers are Jeena Rajan and Aybuke Kupku Yoldas. Image credit: Karen Arnott and Rebecca Nicholl, EMBL-EBI

Graphics image showing webinar at EMBL-EBI about Open FAIR data: the role of public data archives. The webinar will run on 25 June 2025 at 14:30 BST. The speakers are Jeena Rajan and Aybuke Kupku Yoldas. Image credit: Karen Arnott and Rebecca Nicholl, EMBL-EBI

Join our #webinar next week to learn about FAIR data, with a focus on EMBL-EBI resources Biosamples and @bioimagearchive.bsky.social! Registration is free but essential trainingcontent.embl.org/open-fair-da... #datamanagement #FAIRdata #opendata #lifescience @embl.org @ebi.embl.org #PlanetaryBiology

We will be speaking on Wednesday as part of the University of Vienna Open Science and Research Data Management Seminar Series! Join us if you want to learn about what you can expect from the BioImage Archive and the
PANGAEA repository for Earth Sciences.

💡Success stories from AI4Life: From the BioImage.IO models to @bioimagearchive.bsky.social’s AI-ready datasets, and community resources like the Helpdesk, Open Calls, and Challenges — see how it all connects in one ecosystem!

Such a beautiful (and useful) dataset! 🐟✨

It's not something we had in mind when assembling this data with @rebannjones.bsky.social, but it's very gratifying and flattering to see our zebrafish embryo images and annotations feature at the top of the AI Ready list presented by @bioimagearchive.bsky.social

www.ebi.ac.uk/bioimage-arc...

📊 What does AI-ready data actually look like?
Time to find out! Head over to @bioimagearchive.bsky.social’s gallery — it’s like an art museum for high-quality training data and metadata. Perfect for your next model!
www.ebi.ac.uk/bioimage-arc...

Did you know that Bioimage Archive has a specific database for people to share AI-ready imaging datasets? I did not until @yanlanmao.bsky.social told me! Please deposit! If people regularly submitted, it would have a huge collective impact on bioimage analysis. www.ebi.ac.uk/bioimage-arc...

Wonderful! Please keep us in mind 🙂

Outstanding work by @kenzoivanovitch.bsky.social and colleagues. And you can explore this beautiful dataset at the BIA! www.ebi.ac.uk/biostudies/b...

Mesmerising! Are these images publicly available?

We’re excited to share the amazing science our microscopes are enabling🔬

From #3Dimaging technologies to developmental biology, cancer research, spatial-omics and more!🧬🧠

Follow us for cutting-edge discoveries at @embl.org @prbb.org and discover how #mesoscopic imaging can support your research

EMBL-EBI course Microscopy data analysis: machine learning and the BioImage Archive Virtual

This week we've been joined by participants learning more about bioimaging and analysing microscopy data. Thank you to @bioimagearchive.bsky.social and Image Data Resource for your support!

Want to join us for this course next year? Register your interest: www.ebi.ac.uk/training/eve...

🧪🧬🖥️🔬

Thanks for the great lecture Esti, we love some FAIRy deep learning!

🎤 AI4Life continues its presence at the @bioimagearchive.bsky.social course! Esti presents BioImage.IO, emphasizing the importance of keeping AI models accessible, reproducible, and interoperable. With so many image analysis tools out there, common model standards are the way forward!

Such a great lecture and practical, thanks Dominik!

At the @training.ebi.embl.org course on Microscopy Data Analysis: Machine Learning & @bioimagearchive.bsky.social, Dominik Kutra from @ilastik-team.bsky.social introduced ilastik and how it supports image analysis. Now, it's time for a hands-on session! 🚀 #BioImageAnalysis #MachineLearning

What a wonderful week! The #EuroBioImaging All Hands Meeting is the occasion to connect with colleagues from around Europe to exchange on topics ranging from imaging technology innovation, data, training, international collaboration & more.
Thanks for attending online & in person! 🤗
📸 EMBL/PhotoLab

Today we had two fantastic key note talks at #TiM2025. Matthew Hartley enlightened us about #DataSharing through @bioimagearchive.bsky.social
🔬➡️🧑‍🔬
Mayeul Collot invited us into the world of photo-convertable dyes for #highresolutionimaging! 🔴➡️🟢
Many thanks to our amazing speakers!

A photo of Matthew Hartley of the BioImage Archive standing at a podium in front of a slide showing the flags of 43 different countries which are making use of the image archive.

Kudos to Matthew Hartley of the @bioimagearchive.bsky.social for his message of global collaboration in the #bioimaging community @ #TiM2025

👏👏👏

Big news for AI4Life! Our project is a success story by the European Commission! 🇪🇺
The Directorate-General for Research and Innovation (DG RTD) highlights our mission of making AI-powered bioimage analysis accessible to researchers everywhere 🌍
Read more: ai4life.eurobioimaging.eu/ai4life-high...

BioImage Archive User Survey A short survey about your experience on the BioImage Archive

If you are a BIA user or you are interested in using our service, please consider giving us feedback here: forms.gle/gcML5ZjMCDxp...

User Forum Registration Two sessions will be held to accommodate different time zones: Monday 10th March 2025, 9:00-10:30 UTC Monday 10th March 2025, 14:00-15:30 UTC

We are excited to announce the second virtual BioImage Archive User Forum. Join us to learn about our latest developments and future plans (including our brand new website!). 10th March 2025 at 9:00-10:30 UTC or 14:00-15:30 UTC 
Register: forms.gle/MFmCWfPm9Upn...
Agenda: tinyurl.com/biaagenda

Repositories are essential for #FAIR data. Our invited speakers Frances Wong from @openmicroscopy.org #IDR & Aybüke Yoldaş from @bioimagearchive.bsky.social present recent developments at @nfdi4bioimage.bsky.social All-Hands Meeting. We're excited to extend our collaborations ➡️FAIR #bioimaging #NFDI

🚨 Save the Date! 🚨
AI4Life & @globias.bsky.social are hosting a 4-part webinar series to showcase AI4Life services and lessons learned.

📅 When: Feb 13, Apr 10, Jun 12, Aug 14
🖥️ How: Online | 🎥 Recorded
🔗 Registration: bit.ly/registration...

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I’m so excited to share my new website with you all! 🎉 Check it out at falk-illustrations.de, explore my artwork, and feel free to reach out if you're interested in commissions or just want to chat! #SciArt #Illustration #NewWebsite #Cartoons #Excited #AndABitProud

Exciting update!! @bioimagearchive.bsky.social is now hosting the first publicly available Incucyte data! If you have live-cell imaging data, please consider uploading to this amazing repository!! Thanks to Julia Carnevale and Alex Marson for experimental data —

www.ebi.ac.uk/biostudies/b...