Bioconductor

European Bioconductor Conference 2025 – EuroBioC2025 The European Bioconductor Conference (EuroBioC2025) will take place on September 17th to 19th, 2025, in Barcelona, Spain. EuroBioC2025 will bring together the Bioconductor community to showcase the…

📢 Update: Registration Deadline Extended!

You now have until August 28 to register for EuroBioC 2025 and the pre-conference Bioconductor Carpentry workshops 🧬🛠️

If you haven’t signed up yet, there’s still time to join us in Barcelona this September!

🔗 eurobioc2025.bioconductor.org

#EuroBioC2025

Bioconductor Join/follow our community

⏰ Reminder: BioCAsia 2025 workshop EOIs due Aug 1!
🧪 90-min hands-on sessions, part of the Bioconductor event @ ABACBS in Adelaide.
🌐 Info + form: biocasia2025.bioconductor.org

#BioCAsia2025 #Bioconductor #RStats

community-bioc Welcome to the Bioconductor Zulip space! | We’ve moved from Slack to Zulip to ensure sustainable, searchable, and open communication for our community. | Why we moved * If you had a Bioconductor Slack...

A new #rust channel has just been created in the Bioconductor Zulip (chat.bioconductor.org) for anyone interested in continuing the conversation after the session, feel free to join and share resources or questions!

Exploring R and Rust in Bioinformatics – Online Developer Forum, 28 July 2025 – Bioconductor community blog A blog for the Bioconductor community!

🚀 Reminder: Bioconductor Developer Forum is this Monday!

🧵 Topic: R & Rust in Bioinformatics
🗓️ July 28 | 🕚 11am EDT / 5pm CEST
🔗 Details + Zoom: blog.bioconductor.org/posts/2025-0...

#Bioconductor #RStats #RustLang #OpenSource

⏳ Last call to get your sticker on the #EuroBioC2025 Hexwall! Submit by tonight 🎨👇

(Can’t make the deadline? You can still submit for future Hexwalls)

Tagging Bioconductor packages with EDAM – Bioconductor community blog Adopting formal ontology for labeling Bioconductor software and data

📝 New blog post: Tagging Bioconductor packages with EDAM

blog.bioconductor.org/posts/2025-0...

#Bioconductor #RStats #EDAM #Ontology

Bioconductor nominations graphic with CAB and TAB illustrations and www.bioconductor.org

🌟 Bioconductor 2025 CAB & TAB nominations are open!

Join our advisory boards to support community growth or guide technical strategy.

📅 Apply by Aug 31
CAB: forms.gle/8NYxRGhprfuN...
TAB: forms.gle/eqef9ThpUypc...

#Bioconductor #RStats

Bioconductor: Planning a third decade of comprehensive support for genomic data science This opinion piece discusses the Bioconductor project for open-source bioinformatics and the engineering concepts underlying its effectiveness to date…

📄 New opinion piece by Vince Carey: Bioconductor: Planning a third decade of comprehensive support for genomic data science

doi.org/10.1016/j.pa...

#Bioconductor #RStats #OpenScience

A musical note composed of small hexagonal package stickers, arranged in a gradient from dark to vibrant colors. The overall shape resembles a quaver (eighth note), forming a colorful, pixelated mosaic.

🎨 Calling all Bioconductor package developers!

We’re building a Sticker Hexwall for #EuroBioC2025

Submit your package sticker by July 22 to be featured:
🔗 eurobioc2025.bioconductor.org/pages/hexwal...

Know a package that’s missing a sticker? Encourage them to join in!

#Bioconductor #RStats

Projects BioHackathon Europe projects

💻🧬 Join the Bioconductor project at BioHackathon Europe 2025 (Berlin, Nov 3–7)!
In-person registration closes Tuesday, July 15
Project: github.com/elixir-europ...
#BioHackathon #Bioinformatics #Bioconductor

Join the Bioconductor Developer Forum - R & Rust in Bioinformatics

🗓️ 28 July, 17:00–18:00 CEST

Discussing extendr, Rust packages, and real-world use cases.

🔗 blog.bioconductor.org/posts/2025-0...

#Bioconductor #RStats #RustLang #Bioinformatics

Hexagonal logo for BioCAsia 2025 in Adelaide, featuring a stylized landscape with vineyards, mountains, a convention center, a grape cluster, and Bioconductor logo

📣 BioCAsia 2025: Call for Workshops

Join the Bioconductor stream at ABACBS 2025 in Adelaide!

Submit your hands-on workshop EOI by August 1.

Flexible 90-min blocks.

➡️ www.abacbs.org/abacbs-2025-...

#Bioconductor #BioCAsia2025 #RStats

Bioconductor’s First Microbiome Course in Brazil: A Successful Workshop at UFMG in Belo Horizonte – Bioconductor community blog A blog for the Bioconductor community!

Thanks for catching that! 🙏 Here's the correct link: blog.bioconductor.org/posts/2025-0...

#Bioconductor #Microbiome #RStats

🔗 blog.bioconductor.org/posts/2025-0...

📝 New blog post: Bioconductor’s first microbiome workshop in Brazil 🇧🇷
Held at UFMG, led by Leo Lahti & Izabela Mamede - hands-on training using Bioconductor tools & the OMA book.

Visible sur HAL :)

hal.inrae.fr/hal-05142802v1

@ifb-elixir-fr.bsky.social @bioconductor.bsky.social

EuroBioC2025 late-breaking poster abstract submission Please fill the form below before the end of Friday July 11th, 2025, to submit an abstract for a poster to be considered for presentation at EuroBioC2025 in Barcelona on September 17-19, 2025…

⏰ Reminder: EuroBioC2025 late-breaking poster submissions close this Friday, July 11!

Submit your abstract to present your work in Barcelona, Sept 17–19:
🔗 forms.gle/ewTGdKzB2xyEg58f8

Don’t miss your chance to be part of #EuroBioC2025!

#Bioinformatics #RStats #Bioconductor

BugSigDB FROM SCRATCH: LEARNING HOW TO CURATE MICROBIOME STUDIES Hello again 👋 it’s been five weeks of my Outreachy internship with Bioconductor. I’m enjoying working with the Microbiome Study Curation project – BugSigDB, so much that I’m…

BugSigDB-ing from Scratch
by Anne-Marie Sharp

#outreachy @bioconductor.bsky.social

annemariesharp.wordpress.com/2025/07/07/b...

Bioconductor and ggplot2 4.0.0: What’s Changing and How to Prepare – Bioconductor community blog Preparing for the upcoming update - key changes, potential breakages, and what developers and users can do

📝 New blog post: Bioconductor and ggplot2 4.0.0 - What’s Changing and How to Prepare

A major ggplot2 update is coming and may impact Bioconductor packages. What’s changing, how to test, and where to get help 👉 blog.bioconductor.org/posts/2025-0...

#Bioconductor #RStats

Bringing Bioconductor to Galaxy: A CoFest Collaboration – Bioconductor community blog Written during CoFest at GBCC2025, this post shares training materials, introduces Galaxy tool wrapping, and previews what’s next for integrating Bioconductor tools in Galaxy.

📝 New Bioconductor blog post!

Written during #GBCC2025 CoFest, this post highlights recent work to bring Bioconductor tools into Galaxy, featuring training materials, wrapper examples, and ideas for tool developers.

Read more 👉 blog.bioconductor.org/posts/2025-0...

#Bioconductor #GalaxyProject

Vince Carey opening GBCC2025 with a slide highlighting Bioconductor’s technical and community advances.

Charlotte Soneson delivering her keynote titled “From classes to community: how Bioconductor has advanced my research.”

Slide showing GBCC2025 sponsors and supporters - CZI, Limagrain, GalaxyWorks, Bristol Myers Squibb, R Consortium, Gigascience, ELIXIR, NHGRI

Large group photo of GBCC2025 attendees outdoors at Cold Spring Harbor Laboratory, smiling and gathered on the steps.

Big thanks to everyone who made #GBCC2025 a fantastic week of science, collaboration, and community!

Highlights for Bioconductor included keynotes, hands-on projects, and great conversations 💻🧬

@galaxyproject.bsky.social @bioconductor.bsky.social

Love this CoFest energy!
Great to see Galaxy and Bioconductor developers working side-by-side at #GBCC2025, exploring, coding, and learning from each other 💻💙

@galaxyproject.bsky.social @bioconductor.bsky.social

Senior Research Fellow in Bioinformatics and Open-Source Development (Bioconductor Developer Engagement) | University Vacancies Ireland Applications are invited for the following position:

🚀🧬 We're hiring!
Senior Research Fellow – Bioinformatics & Open Source
📍 UL, Ireland | 💻 Hybrid
🗓️ Apply by: 4 July 2025, 12:00 IST
💶 €79–85K

Lead developer engagement for Bioconductor

🔗 universityvacancies.com/university-l...
📩 Questions? Maria Doyle

Awesome first night of the Galaxy and Bioconductor community conference at CSHL. The GBCC Live demo was the star showing off how to connect the communities through a detailed spatial omics tumor analysis. #GBCC2025 @galaxyproject.bsky.social @bioconductor.bsky.social @cshlmeetings.bsky.social

EuroBioC2025 late-breaking poster abstract submission Please fill the form below before the end of Friday July 11th, 2025, to submit an abstract for a poster to be considered for presentation at EuroBioC2025 in Barcelona on September 17-19, 2025…

📣 Late-breaking poster call for #EuroBioC2025 is now open!

Submit by July 11 to present your work in Barcelona this September.
🔗 forms.gle/ewTGdKzB2xyE...
📅 Notifications by July 15

#Bioconductor #Bioinformatics

Bioconductor Training partners with Physalia Courses – Bioconductor community blog A new collaboration to expand access to bioinformatics training through co-branded courses, instructor support, and inclusive access.

🧬 New from the Bioconductor Training Committee:

We’re teaming up with @physaliacourses.bsky.social‬ for co-branded training in bioinformatics and computational biology.

Details here 👉 blog.bioconductor.org/posts/2025-0...

community-bioc Welcome to the Bioconductor Zulip space! | We’ve moved from Slack to Zulip to ensure sustainable, searchable, and open communication for our community. | Why we moved * If you had a Bioconductor…

Two weeks into our move from Slack to Zulip and it’s going great.
Thanks to the Bioconductor community for making the switch smooth.

Join us: chat.bioconductor.org
More info: blog.bioconductor.org/posts/2025-0...

And thanks to the Zulip team for supporting open communities.
#OpenSource

Flyer for EuroBioC2025 Carpentry Workshops in Barcelona, Sept 15–16, 2025. Includes two in-person workshops on bulk and single-cell RNA-seq analysis. Hosted at Universitat Pompeu Fabra. Features logos, QR code, and registration link: eurobioc2025.bioconductor.org.

🎓 Sharpen your RNA-seq skills at EuroBioC2025 Workshops!

📍 Barcelona | Bulk & Single-cell RNA-seq
📅 Sept 15–16 | Hands-on training
🎟️ Limited spots. Register now: eurobioc2025.bioconductor.org

#Bioinformatics #EuroBioC2025

Hi @AKA Bugs Potter what’s happening across the U.S. is awful, and it doesn’t feel like a time for business as usual. We shared the post to support our community, but we hear you. Thanks for speaking up.