Giacinto De Vivo's Avatar

Giacinto De Vivo

@xodroont.bsky.social

BSc in Natural Sciences and MSc in Palaeobiology and Evolutionary Biology. PhD in Evolutionary Biology. Studying vision in octopuses at SZN. 3D modeling - Animal Phylogenetics - Integrating Paleontology with Molecular Biology.

257 Followers  |  594 Following  |  9 Posts  |  Joined: 12.11.2024
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Posts by Giacinto De Vivo (@xodroont.bsky.social)

As a reminder, single-copy orthologs identified using OrthoSNAP are largely indistinguishable from traditional single-copy orthologs across multiple dimensions of phylogenetic information bsky.app/profile/jlst...

20.02.2026 17:25 β€” πŸ‘ 0    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Above 94, not 95

11.02.2026 07:22 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

25% scored above 95? Well we got AI, and it show it is all about writing, and more people from other countries, including americans, competing. But that mooved the line of about 1.5 points, not 3...
The topic here should be the lack of research founding anywhere, the % of success, not the scores...

11.02.2026 07:02 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 2    πŸ“Œ 0
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For what I see, the % of success rate is the problem, due to the huge increase of applicants and the limited budget available. People with more than 95.6 would getting founded if the same success rate % remained the same of the other years.

11.02.2026 06:59 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Yes, we got valid alternative with the seal of excellence, but it is still a ridiculus system. It shows that we (Europe) have many excellences but we are not able to cultivate them.

09.02.2026 07:48 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Scored above 96 for my MSCA Fellowship. Result: Rejection.
Apparently, 96% isn't excellent anymore, but a polite "no". If such a score is a fail, we aren't evaluating science, we're playing a lottery where the ticket costs months of work. Academia is failing us. #MSCA #MSCA2025 #Research

09.02.2026 04:06 β€” πŸ‘ 18    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

Happy to share Jialin's first publication. She did a great job exploring the transition to land in animals. Co-supervised by the great Jordi Paps and me and in collaboration with Davide Pisani and @phil-donoghue.bsky.social

13.11.2025 15:18 β€” πŸ‘ 64    πŸ” 34    πŸ’¬ 2    πŸ“Œ 3
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Happy Partially Muscled Skeleton Day to all who celebrate. Be sure to let all your screams out and then disappear.

14.11.2025 11:28 β€” πŸ‘ 9088    πŸ” 1831    πŸ’¬ 158    πŸ“Œ 69

Maybe that is stupid, but i would retry to do the synteny analysis using the only the genes you identified, since as far i have understood, they are more reliable as true orthologous.

14.11.2025 20:45 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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NEW pub in @science.org πŸ₯³

Is it sponges (panels A & B) or comb jellies (C & D) that root the animal tree of life?

For over 15 years, #phylogenomic studies have been divided.

We provide new evidence suggesting that...

πŸ”—: www.science.org/doi/10.1126/...

13.11.2025 20:33 β€” πŸ‘ 284    πŸ” 130    πŸ’¬ 14    πŸ“Œ 30
GBE | An Ocean of Opsins

GBE | An Ocean of Opsins

@xodroont.bsky.social et al. explored the diversity and evolution of opsins using meta-omic data from the Tara Oceans and Tara Polar Circle expeditions, identifying opsins across the different metazoan groups.

πŸ”— doi.org/10.1093/gbe/evaf189

#genome #evolution #opsins

14.11.2025 11:04 β€” πŸ‘ 25    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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An Ocean of Opsins Abstract. In this study, we explored the diversity and evolution of opsins using meta-omic data from the Tara Oceans and Tara Polar Circle expeditions, one

Thrilled to share our new paper in Genome Biology & Evolution! 🌊
We discovered an ocean of opsins in marine zooplankton β€” unveiling how these animals evolved to sense light across the world’s seas.
πŸ”— academic.oup.com/gbe/article/...

#MarineBiology #Evolution

04.11.2025 14:57 β€” πŸ‘ 11    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
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Genomic constraints shape the evolution of alternative routes to drug resistance in prokaryotes Background Variation within the prokaryotic pangenome is not random, and natural selection that favours particular combinations of genes appears to dominate over random drift. What is less clear is wh...

New preprint reveals bacteria can't just collect all resistance genes like Pokemon cards.
We found mutually exclusive evolutionary pathways to multidrug resistance in E. coli & P. aeruginosa - some resistance mechanisms actively prevent others from coexisting www.biorxiv.org/content/10.1...

29.08.2025 14:05 β€” πŸ‘ 165    πŸ” 77    πŸ’¬ 4    πŸ“Œ 5
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Great job @xodroont.bsky.social at #ESEB2025 !!!

18.08.2025 12:54 β€” πŸ‘ 6    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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An ocean of opsins https://www.biorxiv.org/content/10.1101/2024.11.07.622103v1 In this study, we explored the diversity and evolution of opsins using meta-omic data from the TARA

An ocean of opsins https://www.biorxiv.org/content/10.1101/2024.11.07.622103v1

08.11.2024 09:32 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Post image 13.11.2024 16:10 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Something geeky outside the science geek.
The constume was designed by me starting from the in game Alakazam 3-D model! I am quite proud of it!
Thanks to @GMennellla for the amazing interpretation!
#Pokemon #cosplay #luccacomics #luccacg24 @PokemonIT @Pokemon @LuccaCandG

13.11.2024 16:10 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0