Photo of the Modernising Medical Microbiology Green Team wearing protective clothing, helmets, and safety goggles at the Ardley Energy Recovery Centre during their field trip to see first hand how Oxfordshire waste is burned, instead of ending up in landfill, to generate electricity.
🧪 ♻️ Want to make lab and computational research more sustainable? Check out our Oxford Climate Society blog post:
oxfordclimatesociety.com/blog/from-pi...
Shout out to Green Team colleagues @modmedmicro.bsky.social for helping! #LEAFAward #GreenDiSC #GreenImpact #SustainableScience
30.09.2025 17:00 — 👍 5 🔁 2 💬 1 📌 0
To summarise our recent pre-print: Autocycler, the automated consensus assembler, when used with Nanopore long-read only Enterobacterales assemblies, produces more complete chromosomes and plasmids, with an accuracy comparable to hybrid assemblies.
29.09.2025 06:57 — 👍 26 🔁 16 💬 1 📌 0
A highly inspiring week meeting fellow infectious disease researchers, and learning how to integrate genomics with infectious disease models! Feeling very fortunate to have been selected to attend this course. Thank you @training.ebi.embl.org for organising!
25.09.2025 16:09 — 👍 2 🔁 0 💬 1 📌 0
Thank you to everyone who joined us this week for the @embo.org Practical Course 'Methods for infectious disease modelling using genomics'.
Join us for 2026's EMBO Practical Course. Sign up for 'Causality in biomedicine' alerts and hear as this new course develops: www.ebi.ac.uk/training/eve...
🧬🧫
19.09.2025 08:33 — 👍 5 🔁 5 💬 0 📌 2
Pleased to see this pre-printed, highlighting the completeness/accuracy of @nanoporetech.com long-read genome assembly for clinical Enterobacterales: www.biorxiv.org/content/10.1...
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
25.09.2025 08:48 — 👍 10 🔁 12 💬 1 📌 1
ModMedMicro at #ESCMIDGlobal (well nearly everyone!)
14.04.2025 14:08 — 👍 8 🔁 2 💬 0 📌 0
Busy day at #ESCMIDGlobal for us!
Check out
1330 Justin Xu in Hall 2 "AI in radiological reports"
1445 @samlipworth.bsky.social in Area 3 "Mol epi of Kleb using ONT"
P0602 @philipwfowler.bsky.social
P0663 Jeremy Westhead
P0675 Dylan Adlard
P0730 Amelie Andrews
P0869 @dotnagy.bsky.social
13.04.2025 05:22 — 👍 3 🔁 2 💬 0 📌 1
Delivering world-class bioinformatics training in data-driven life sciences virtually, and onsite at EMBL's European Bioinformatics Institute in Hinxton, UK.
www.ebi.ac.uk/training
Microbial Bioinformatics scientist. Host the MicroBinfie and The Bioinformatics Lab Podcasts. CTO at Origin Sciences
Professor of Algorithmic and Microbial Genomics at the University of Bath (UK). Pangenomes, drug resistance (esp TB), data structures for DNA search, plasmid evolution, global microbial surveillance. Open Data, reproducibility
Public health (meta)genomics & bioinformatics, Prof @unibirmingham.bsky.social, Director @imibirmingham.bsky.social & @climb.ac.uk
Die Virenjägerin! 🏹🧬!
Using programming & phylogenetics, I study & track viruses. Co-developer of Nextstrain, based at Swiss TPH & Uni Basel.
Founder of the orig SC2 variant-tracking website, CoVariants.org
I like 🐈 & 🛫
@firefoxx66@mstdn.science
Microbial bioinformatics, genomics, software, clinical and public health microbiology
More details at https://tseemann.github.io
Scientist… pathogen genomics & antimicrobial resistance, computational biology & infectious disease epidemiology.
Co-Director LSHTM AMR Centre @lshtmamrcentre.bsky.social
holtlab.net | klebnet.org | typhoidgenomics.org | amr.lshtm.ac.uk
Molecular #epidemiology & #publichealth. Pathogen #genomics, #microbiology, #emerginginfections, #AMR, (bio)tech and #opendata.
Personal account. Opinions/dad jokes are my own.
https://duncan.bio
🦅 “Low productivity” public sector employee.
🔬🦠🧬🖥️💉🌻🍩🐸🥪
Head of the School of Infection, Inflammation & Immunology @ Uni Birmingham. Proud Scot. Oversaw a few Covid PCR tests
Prof @cambridgebiosci.bsky.social Genomic epidemiologist connecting pathogen evolution with public health outcomes. #Shigella and #AMR enthusiast. Views own. http://gen.cam.ac.uk/baker-group also www.pdu.gen.cam.ac.uk also @pducambridge.bsky.social
Public health bacterial genomics, bioinformatic workflow development, and training. Bactopia (https://bactopia.github.io). @ Wyoming Public Health Laboratory
#bioinformatics at @SANBI_SA, building bioinformatics workflows for (Pan-)African PH. health & justice! married. @pvanheus@mstdn.science
Microbiologist @ Vet School, genomics/pathogens. Views, compliments and rants are my own. ORCID: 0000-0003-0203-1305. Am trying to avoid getting politics in my mentions, science and cats OK!
UKRI Future Leaders Fellow, University of Birmingham
Sequencing, adapting and exploring genomes.
https://linktr.ee/matt.loose
UofArizona #Aggie > UofMaryland PhD > NIH/NCI PostDoc > Biodefense, Pathogen #Genomics, #Bioinformatics, Data Authenticity, #BioSecurity. ++PC gaming, DnD, EDM, punk, goth, backcountry backpacking, porsche
🎲♟️👾🎮 🎸 🧪 🧬 🖥 🦠🚀🏎️
he/him. On Steam: @bioinformer
Ast Prof CS+Epi at Dalhousie/Pathogenomics Bioinformatics Lead at Shared Hospital Lab (Sunnybrook): infectious disease genomic epidemiology (AMR/SC2/Zoonoses) & socially-focused collab data science (he/him)
Microbiology PhD, co-author of antiSMASH, Open Source geek, views are my own. @kblin@scholar.social
Virus evolution, bioinformatics & phylogenetics. Researcher at University of Edinburgh.
