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Mark

@mkeller7.bsky.social

Researcher in bioinformatics working on single-cell data visualization https://markk.co

765 Followers  |  1,214 Following  |  55 Posts  |  Joined: 04.08.2023
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Posts by Mark (@mkeller7.bsky.social)

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When D3 was released in February 2011, it transformed how we build data visualizations for the web and ushered in a new age of unbridled creativity in information design, data journalism, and beyond. Today, it remains the backbone of modern, interactive data viz.

Happy 15th birthday, D3 πŸŽ‚
d3js.org

27.02.2026 20:38 β€” πŸ‘ 156    πŸ” 37    πŸ’¬ 0    πŸ“Œ 7
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now with fixed pixel size physical scaling

24.02.2026 15:21 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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No context side project πŸ‘€

23.02.2026 22:47 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Zarr ZipStore with the JSON as its .attrs

22.02.2026 00:47 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

DHS is holding a 2-month-old BABY at a detention facility in Texas.

Last night, Juan NicolΓ‘s was rushed to the hospital after choking on his own vomit & being unable to breathe.

This demands accountability β€” not a blank check for more cruelty.

18.02.2026 00:18 β€” πŸ‘ 6913    πŸ” 2517    πŸ’¬ 212    πŸ“Œ 120
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The FDA has refused to accept an application from Moderna to review its first mRNA seasonal flu vaccine, the company said, in another setback for the technology that’s been a target of some Trump administration health officials. https://cnn.it/4kt8iyn

10.02.2026 23:19 β€” πŸ‘ 445    πŸ” 256    πŸ’¬ 74    πŸ“Œ 159
A demonstration of where you can find the drafts feature in the top right corner of the post composer on Bluesky.

A demonstration of where you can find the drafts feature in the top right corner of the post composer on Bluesky.

v1.116 is rolling out now!

For all the overthinkers and perfectionists out there,Β we're launching Drafts.

09.02.2026 20:21 β€” πŸ‘ 15839    πŸ” 3436    πŸ’¬ 917    πŸ“Œ 2475
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ICE to begin detaining immigrants inside Social Circle warehouse in April Homeland Security plans to build warehouse detention facilities in other cities being met with opposition.

ICE has now spent over half a BILLION dollars just on purchasing warehouses around the country to convert into detention camps.

If these mega-camps are utilized to the full capacity ICE intends, they'll be the largest prisons in the country, with little real oversight. www.ajc.com/politics/202...

09.02.2026 17:56 β€” πŸ‘ 12867    πŸ” 7482    πŸ’¬ 1288    πŸ“Œ 1242

marimo

06.02.2026 21:20 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Transplant recipient arrested by federal agents in Rochester needs medicine, state representative says State Rep. Kim Hicks told MPR News she drove to the Whipple Federal Building near Ft. Snelling Thursday night to give the man his medication but authorities wouldn't take it without a doctor's note. S...

A man taken into custody in Rochester Thursday by federal immigration agents and now held at the Whipple Federal Building in the Twin Cities is a recent organ transplant recipient who is without his needed anti-rejection medication, state Rep. Kim Hicks tells MPR News.

06.02.2026 18:07 β€” πŸ‘ 2821    πŸ” 1702    πŸ’¬ 120    πŸ“Œ 248

The new updates for Charles McAnany’s preprint β€œPositional Interpretation of Cis-Regulatory Code and Nucleosome Organization with Deep Learning Models” (www.biorxiv.org/content/10.1...) are up!

We introduce PISA, a tool to visualize the cis-regulatory code. See a recap below:

05.02.2026 19:29 β€” πŸ‘ 11    πŸ” 3    πŸ’¬ 1    πŸ“Œ 1

First ai ruined dashes, now it has also ruined UIs with gradients and rectangular divs with lots of padding and large corner radii

04.02.2026 14:17 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Been calling senators/reps offices a lot lately but just had a real human staffer pick up for the first time to listen to my comment. This tells me their lines are not busy enough! Fill up their voicemails!

04.02.2026 14:14 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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It’s -9 degrees. Downtown Minneapolis is packed for the anti-ICE rally and the crowd keeps growing

23.01.2026 20:16 β€” πŸ‘ 37426    πŸ” 10909    πŸ’¬ 809    πŸ“Œ 975

Any one of these daily atrocities should result in a full congressional investigation and a disbanding of the agency. The fact that it’s all just shrugged off by those with the power to stop it is a national disgrace.

19.01.2026 11:58 β€” πŸ‘ 4013    πŸ” 1089    πŸ’¬ 32    πŸ“Œ 11
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Zeynep Tufecki on having the wrong nightmares about generative AI I was writing a blog post where I was going to reference Zeynep Tufecki’s 2025 NeurIPS keynote, and realized there isn’t a solid synopsis online.

Wrote a summary of a great keynote by @zey.bsky.social at NeurIPS, arguing that we’re having the wrong nightmares about AI: not AGI or superhuman benchmarks, but good-enough genAI at scale threatens "load bearing frictions" society relies on to signal effort, authenticity, sincerity, credibility.

09.01.2026 16:42 β€” πŸ‘ 81    πŸ” 27    πŸ’¬ 2    πŸ“Œ 1
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Progressive Caucus Backs Bill To Redirect ICE Money To Affordable Housing

The Congressional Progressive Caucus, a group of nearly 100 House Democrats, will announce later today that it's formally endorsing legislation to strip $175 billion from ICE and put it toward affordable housing. www.huffpost.com/entry/doj-fe...

14.01.2026 20:00 β€” πŸ‘ 7177    πŸ” 1758    πŸ’¬ 97    πŸ“Œ 345
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Today at 34 & Park in Minneapolis, a woman tried to drive down the street where a protest had broken out in front of a home ICE was raiding, saying she had a doctor apt to get to. ICE agents busted out her windows, cut off her seatbelt, and pulled her out before arresting her.

13.01.2026 18:56 β€” πŸ‘ 11237    πŸ” 6387    πŸ’¬ 142    πŸ“Œ 1730
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GitHub - LayoutitStudio/voxcss: A DOM based voxel engine. Renders HTML cuboids by stacking CSS grid layers and applying 3D transforms. A DOM based voxel engine. Renders HTML cuboids by stacking CSS grid layers and applying 3D transforms. - LayoutitStudio/voxcss

Introducing VoxCSS: a DOM based voxel engine

github.com/LayoutitStud...

02.12.2025 15:46 β€” πŸ‘ 9    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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A video of ICE agents conducting door-to-door searches today in Minneapolis

The homeowner requests a warrant repeatedly, is told they don't require one, then is told they're getting it, then the agents storm in anyway

They also point a taser at her to try and disrupt filming

12.01.2026 01:42 β€” πŸ‘ 8317    πŸ” 4585    πŸ’¬ 775    πŸ“Œ 1245
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Liberty Puzzles | Wooden Jigsaw Puzzles The original wooden jigsaw puzzle maker. Established in 2005, all of our 1000+ puzzles are handmade in Boulder, CO with exquisite quality & craftsmanship. Full of odd-shaped "whimsy" pieces, our woode...

libertypuzzles.com these are very nice

10.01.2026 20:38 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 2    πŸ“Œ 0
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πŸ”¬ pertpy: a unified, scalable framework for single-cell perturbation analysis, now out in Nature Methods

Designed for modern perturbation data - CRISPR, drug screens, patient treatments - scaling to millions of cells and 1000s of conditions.
πŸ‘‰ www.nature.com/articles/s41...

08.01.2026 16:30 β€” πŸ‘ 27    πŸ” 11    πŸ’¬ 1    πŸ“Œ 0
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A new paper from Stanford adds further, incontrovertible evidence that LLMs memorize training data.

The authors showed that copyrighted works can be extracted from every LLM they tried: GPT-4.1, Gemini 2.5 Pro, Grok 3, and Claude 3.7 Sonnet.

🧡 1/3

arxiv.org/pdf/2601.026...

08.01.2026 09:53 β€” πŸ‘ 61    πŸ” 29    πŸ’¬ 4    πŸ“Œ 5
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GitHub - keller-mark/dynamic-importmap: Rewrite bare import specifiers at runtime in the browser Rewrite bare import specifiers at runtime in the browser - keller-mark/dynamic-importmap

Great points! I created dynamic-importmap in response to some of the challenges that you also note in "Improving import maps" github.com/keller-mark/... A version of this is now being used by Wordpress github.com/WordPress/gu...

07.01.2026 19:42 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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It’s hard to justify Tahoe icons Looking at the first principles of icon designβ€”and how Apple failed to apply all of them in macOS Tahoe

Too lazy for 2 clicks, here you go: tonsky.me/blog/tahoe-i...

06.01.2026 17:44 β€” πŸ‘ 7    πŸ” 3    πŸ’¬ 0    πŸ“Œ 1

πŸŽ‰ New year, NEW PREPRINT!

Bacteria exhibit astonishing genetic diversity, but where do new genes come from?

My best friend Arya Kaul (/labmate in the @baym lab) investigates how advantageous deletions can spawn new genes - "deletion-born fusions." 🧡:

06.01.2026 16:09 β€” πŸ‘ 49    πŸ” 30    πŸ’¬ 1    πŸ“Œ 2

7/ Here's the bottom line: This is an unprecedented shift that risks weakening protection against preventable diseases at a time when outbreaks are rising and children are already being hospitalized. Vaccines don’t work without strong supporting systems...and the U.S. doesn’t have Denmark’s.

05.01.2026 20:52 β€” πŸ‘ 113    πŸ” 18    πŸ’¬ 3    πŸ“Œ 0
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Anisota's Annual Bluesky Harvest 2025 A recap of your year on Bluesky. Discover patterns, connections, and insights from your journey in the ATmosphere.

Hello moths,

The harvest has arrived: anisota.net/harvest

It's like Spotify Wrapped, but for Bluesky and the ATmosphere. 🌾

See your most-used words, discover who you interact with most, explore your posting patterns, and find all sorts of fun insights.

27.11.2025 17:51 β€” πŸ‘ 1450    πŸ” 423    πŸ’¬ 83    πŸ“Œ 1637