Programme of the upcoming TriRhena Gene Regulation Club in Basel on November 5, 2025
https://www.ie-freiburg.mpg.de/gene-regulation-club
Here is the schedule for the next TriRhena Gene Regulation Club at the FMI @fmiscience.bsky.social in Basel 🇨🇭 next week (5 Nov 2025; 14:00-18:45).
Exciting topics ahead & we are looking forward to the #newPI talks by @julianeg.bsky.social (MPI) & Anupama Hemalatha (FMI).
www.ie-freiburg.mpg.de/grc
30.10.2025 09:17 — 👍 12 🔁 7 💬 0 📌 0
GCC2026: The Galaxy Community is Heading to Clermont-Ferrand, France
Join us in June 2026 in the volcanic heart of Clermont-Ferrand for a week of collaboration, discovery, and open science.
Workflows by day, French wine and cheese by night 🍷🧀
Get ready to join us in Clermont-Ferrand, France for #GCC2026, June 22–26 2026! Learn, collaborate, and celebrate open science in the heart of Auvergne.
galaxyproject.org/news/2025-10...
30.10.2025 15:31 — 👍 4 🔁 3 💬 0 📌 0
GALAXY-CH Transdisciplinary Workflows Workshop Registration
Galaxy is a web-based and open-source platform (see e.g. https://usegalaxy.eu/). It shall enable researchers to access and use computational tools and high-performance compute infrastructures easily. ...
Join our interdisciplinary online workshop on the Galaxy platform! Nov 6, 2025 | 13:30–16:05 (CET)
Learn how to build reproducible data analysis workflows using Galaxy, a powerful, user-friendly platform. The session is intended for the Swiss rsrch community.
Register forms.gle/Y3vxW1u62FLM...
29.10.2025 16:19 — 👍 2 🔁 3 💬 0 📌 0
🌌🧬 The legendary hands-on @galaxyproject.bsky.social workshop is back—don’t miss out!
📅 March 9–13, 2026 | 📍 Uni Freiburg
Beginners welcome—learn QC, #ChIP-seq, #RNA-seq, variant calling & #microbiome analysis in Galaxy!
🔗 More info: training.galaxyproject.org/training-mat...
#useGalaxy #NGS
28.10.2025 11:12 — 👍 1 🔁 1 💬 0 📌 0
There is a little known Galaxy feature called "window manager". See how to use it ... https://galaxyproject.org/news/2025-10-28-window-manager/
28.10.2025 16:42 — 👍 2 🔁 1 💬 0 📌 0
🧬 EuroBioC2026 is coming to Turku, Finland, from June 3–5, 2026!
Expect 3 exciting days with the Bioconductor community, showcasing the latest advances in Bioconductor software and emerging technologies shaping computational biology.
👉 More details soon at eurobioc2026.bioconductor.org
29.10.2025 09:02 — 👍 11 🔁 11 💬 0 📌 0
Three FMI researchers awarded coveted SNSF Ambizione Grants
Three FMI researchers — Nanci Winke, Arnau Ramos Prats, and Lukas Anneser — have been awarded a prestigious Ambizione Grant from the Swiss National Science Foundation (SNSF). Their work spans from unc...
Three FMI researchers—Nanci Winke, @neuramos.bsky.social & @lukas-anneser.bsky.social—have received @snsf.ch Ambizione Grants! Their projects explore how emotions shape behavior, how the brain responds to anxiety treatments, and how brain states affect learning & memory 🧠 www.fmi.ch/news-events/...
29.10.2025 09:06 — 👍 20 🔁 4 💬 0 📌 0
The official home of the Python Programming Language
TLDR; The PSF has made the decision to put our community and our shared diversity, equity, and inclusion values ahead of seeking $1.5M in new revenue. Please read and share. pyfound.blogspot.com/2025/10/NSF-...
🧵
27.10.2025 14:47 — 👍 6287 🔁 2746 💬 125 📌 451
BOSC 2025 organizing committee
Save the date: #BOSC2026 (www.open-bio.org/events/bosc) will take place July 13-14 in Washington, DC, as part of ISMB 2026 (July 12-16). We hope you will join us in person or online! 🍐
#Bioinformatics #OpenSource
27.10.2025 22:45 — 👍 4 🔁 2 💬 0 📌 1
For over 20 years, the mouse model organism has helped scientists uncover the biology behind human health and disease.
But the mouse reference genomes still have missing pieces.
The first collection of telomere-to-telomere mouse genomes are now available for two key mouse strains.
🧬💻
27.10.2025 11:51 — 👍 38 🔁 18 💬 1 📌 1
📣 ELIXIR, @eurobioimaging.bsky.social, @instruct-eric.bsky.social & @embl.org joined forces to establish 🙌 the #EOSC Life Sciences Connect Node: https://loom.ly/9BLk_tY
#EOSC_Federation
27.10.2025 02:30 — 👍 8 🔁 6 💬 0 📌 1
#OAWeek 💡Today’s #ELIXIRFridayReads, we are revisiting the ELIXIR position paper on the importance of #opendata infrastructure for European 🌍 competitiveness in #lifesciences. What actions are needed to secure its future?
Read the paper 👉 https://loom.ly/ZjbrX2c
24.10.2025 03:01 — 👍 1 🔁 2 💬 0 📌 0
RO-Crate
RO-Crate preview
Specification for RO-Crate 1.2 released
https://galaxyproject.org/news/2025-06-04-ro-crate-1-2-release/
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway #rocrate #fair #research_data #research #data
23.10.2025 14:04 — 👍 4 🔁 1 💬 0 📌 0
Use parallel-download to get data from NCBI SRA. See how here -> https://galaxyproject.org/news/2025-10-23-sra-download/
23.10.2025 21:09 — 👍 2 🔁 1 💬 0 📌 0
The Galaxy Freiburg team at CoRDI
Galactic views on the Conference on Research Data Infrastructure (CoRDI):
https://galaxyproject.org/news/2025-08-29-cordi/
#UseGalaxy #GalaxyProject #NFDI #UniFreiburg #RDM
22.10.2025 12:29 — 👍 2 🔁 2 💬 0 📌 0
GitHub - chanzuckerberg/cellxgene: An interactive explorer for single-cell transcriptomics data
An interactive explorer for single-cell transcriptomics data - chanzuckerberg/cellxgene
📝 New blog post Released!
https://galaxyproject.org/news/2025-02-13-cellxgene-vip/
CELLxGENE-VIP (Visualization In Plugin) is an extension of the original CELLxGENE: https://github.com/chanzuckerberg/cellxgene tool developed by the Chan Zuckerberg Initiative.
It can efficiently extract deep (1/4)
22.10.2025 15:32 — 👍 5 🔁 1 💬 1 📌 0
Discover one of Galaxy’s true superpowers — dataset collections! 🌟
Check out the blog (https://galaxyproject.org/news/2025-10-21-whycollections/) and video (https://youtu.be/yehY9tR_NX8?si=YH9CZ5KGWm2yVyPA) to see how they can simplify your workflows.
You might just find yourself wondering, (1/2)
21.10.2025 20:26 — 👍 5 🔁 2 💬 1 📌 0
Exploring Genomics with Galaxy: A Six-Week Internship Journey
My internship experience with assembling genomes and annotating them during a 6 week internship
My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
https://galaxyproject.org/news/2025-07-22-ming-li-internship/
#UseGalaxy #GalaxyProject #EOSC #Bioinformatics #Genomics #GenomeAssembly #GenomeAnnotation #TrainingProgram (1/2)
21.10.2025 07:57 — 👍 2 🔁 1 💬 1 📌 0
2026 Galaxy Community Conference (GCC2026)
The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.
Science, volcanoes, and the Galaxy community...what more could you ask for? 🌋🇫
In case you missed it! The Galaxy Community Conference (#GCC2026) lands in Clermont-Ferrand, France, June 22–24, 2026! CoFest follows from June 25–26.
Learn more and sign up for emails:
galaxyproject.org/events/gcc20...
20.10.2025 13:10 — 👍 7 🔁 4 💬 0 📌 0
And the next one: dx.doi.org/10.1038/s44318-025-00585-z . Super-fun collaboration with @partchlab.bsky.social & @gotworms.bsky.social to find similarities between developmental and circadian clocks – supported by @fmiscience.bsky.social Facilities and, financially, @snsf.ch and @erc.europa.eu . 1/n
20.10.2025 13:25 — 👍 20 🔁 11 💬 1 📌 1
Tabula Sapiens and Tabula Muris Senis Atlases Now Available in Galaxy
Comprehensive Single-Cell Reference Atlases Ready for Import
Comprehensive Single-Cell Reference Atlases Ready for Import
https://galaxyproject.org/news/2025-10-16-tabula-atlas/
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #Single-cell #tabula_sapiens #Tabula_muris_senis
20.10.2025 08:48 — 👍 4 🔁 1 💬 0 📌 0
graphical abstract
Flexynesis: bridging multi-omics complexity with transparent AI for Cancer research and beyond
https://galaxyproject.org/news/2025-10-16-flexynesis-nature-comms/
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #NatureCommunications #ScientificResearch #deeplearning #precision_medicine #open_science
20.10.2025 08:49 — 👍 4 🔁 1 💬 0 📌 0
Junior Group Leader - Friedrich Miescher Institute @FMIScience / We are interested in imaging how cells compute growth cues via metabolism / former postdoc @Greco Lab, Yale / PhD @Jitu Mayor Lab NCBS, India
Historian with a Sinology background working with digital humanities, researching the press, extracting workflows and excited about words, printed and digital […]
[bridged from https://fedihum.org/@SchnDa on the fediverse by https://fed.brid.gy/ ]
Join us for the 5th Open Science Fair conference, an international event for all topics related to #OpenScience
Swiss National Center of Competence in Research (NCCR): The role of RNA in disease mechanisms. Propelling research forward since 2014.
@snsf-ch.bsky.social @unibern.bsky.social @ethzurich.bsky.social
https://nccr-rna-and-disease.ch/
manager in a bioinformatics core
I might post over here sometimes:
https://genomic.social/@mmarchin
Technology-driven biomedical research at CeMM Research Center for Molecular Medicine & MedUni Vienna #cancer #immunology #bioinformatics #AI #singlecell #CRISPR
• home to the world famous #magicpuss & #chromapuss
• lovely art by @micheleclamp.com
• learn to see color, paint color @ https://chromamagic.com
• posts by @forbiddenunix.com, a #plundercats fan
Computational neuroscientist at the FMI.
www.zenkelab.org
International, independent, interdisciplinary research institute. Integrates basic research and clinical expertise for innovative diagnostics and therapeutics.
🔗 http://www.cemm.oeaw.ac.at/
The Swiss Reproducibility Network (SwissRN) is a peer-led consortium that aims to promote and ensure rigorous research practices in Switzerland.
Find out more: https://www.swissrn.org/
Associate Professor
DFCI & HMS
We are an open biodiversity genomics community to generate reference quality genomes for all European species. #Genomes for #Biodiversity
https://www.erga-biodiversity.eu/ | https://linktr.ee/erga_biodiversity
Walker, archer, and volunteer woodland warden by weekend, and bioinformatics software engineer and general geek by weekday.
My favourite prime is 15551, my favourite colour is, obviously, octarine, and I love nothing more than being immersed in nature.
Neuroscientist at the FMI Basel, investigating memories and how to change them
The de.NBI network provides bioinformatics services and comprehensive compute resources to researchers in the life sciences and biomedicine in Germany and Europe. Since August 2016 the German Node of ELIXIR, ELIXIR Germany, is run by de.NBI partners.
SNF Ambizione Fellow at the FMI in Basel, Switzerland. Studying how dynamic chromatin regulates development. https://methstep.github.io/
🌱OLS community and training lead
🧫DSxHE community manager
Co-chair CM WG @TuringWay
Core member or RCM coop
#OpenScience trainer #CommunityManagement
A life sciences research infrastructure, bringing together #bioinformatics resources across Europe to store, analyse, share and reuse data.
