ilastik-team.bsky.social

We are hosting an #Ilastik workshop on March 27th, led by Dominik Kutra, senior research software engineer @ilastik-team.bsky.social

The course is open to students and staff at @crick.ac.uk and partner universities (@ucl.ac.uk, @kingscollegelondon.bsky.social and @imperialcollegeldn.bsky.social)

The first meeting was a blast and the second one promises to be even better - if you submit your abstract and join us!

Yay for more accessible tools, Ricardo, congrats on bringing it all together! Hope to see the models in the BioImage Model Zoo soon ;)

Thanks, nice to see more opportunities around the world! We will probably go to EurIPS, but hope you have a great one in Mexico.

In more detail, check out this deep dive tutorial to learn about the trade-offs in feature normalisation strategies inside the network and how the affect segmentation performance: buglakova.github.io/train-eval-d...

Large images have to be broken into tiles both for training and inference with neural networks. The tile predictions then need to be merged to produce the final volume prediction.

Segment large images without tiling artifacts: sharing our work that should have been presented at ICCV in 2 weeks - the brilliant first author Elena can’t go because of visa issues.
The paper: arxiv.org/abs/2503.19545 1/🧵

Join EMBL as a research group leader in AI in biology. EMBL AI is our new initiative aiming to exploit the full potential of ML/AI-based approaches to advance our understanding of the most complex system in the known universe - life on Earth.
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
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The 2nd AI4Life Challenge is live!
Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail.

📦 Paired noisy/clean datasets
📈 Ground-truth evaluation
🧠 DL focus

Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/

🐾 The BioImage Model Zoo just got a major upgrade!

It has been fully redesigned, offering a new backend, model uploader, community curation tools, and integrated browser-based test runs powered by BioEngine. 🧪

Explore now 👉 bioimage.io

Another year, another #BIC Workshop!
This year at #ICCV 2025 in Honolulu, 🌺 🏄‍♀️ 🍹 🌼

Check it here: www.bioimagecomputing.com

Submission deadline: July 4th
Hey, you have a month left to submit your work!!! 👍

New Contributors for this release: Oane Gros, Theodoros Katzalis, Jordan Matelsky, Aryan Kumar, Palak Kumari, Tanisha (tanisha25)

Big thanks to all users who gave us feedback and suggestions, and to @cziscience.bsky.social for the EOSS progam.

New stable ilastik version 1.4.1 at www.ilastik.org/download!

Release Highlights:
- Support for OME-zarr (v0.4)
- New workflow - Trainable Domain Adaptation
- New object features based on Spherical Harmonics Feature, contributed by @grosoane.bsky.social.
- Native support for Apple Silicon

📆Deadline today: Friday, 4 April. Apply at bit.ly/4aXgFxq

#Microscopy #SciSky #ECR

Big news for AI4Life! Our project is a success story by the European Commission! 🇪🇺
The Directorate-General for Research and Innovation (DG RTD) highlights our mission of making AI-powered bioimage analysis accessible to researchers everywhere 🌍
Read more: ai4life.eurobioimaging.eu/ai4life-high...

If you have talented students in your team looking for a coding-heavy summer project, let them know that ilastik is participating in Google Summer of Code 2025! We are a sub-org under the Python Software Foundation. Come code with us as a (paid!) open source internship: github.com/btbest/gsoc-...

Look at these beautiful new object features, now available in ilastik! Big thanks to Oane @grosoane.bsky.social for bringing them to all our users!

A new format to ask all you ever wanted to ask about ilastik:

Hi everyone! Fulfilling our New Year's resolution to finally move away from X, and already finding so many old friends! Stay tuned for our news, everything will be here from now on.