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Kate Baker

@ksbakes.bsky.social

Prof @cambridgebiosci.bsky.social Connecting pathogen evolution with public health outcomes. #Shigella and #AMR enthusiast. Views own. http://gen.cam.ac.uk/baker-group also www.pdu.gen.cam.ac.uk also @pducambridge.bsky.social

2,136 Followers  |  536 Following  |  182 Posts  |  Joined: 04.11.2023
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Posts by Kate Baker (@ksbakes.bsky.social)

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The role of microbial genomics in delivering the UK’s national action plan for confronting antimicrobial resistance 2024–29 Antimicrobial resistance (AMR) is a major threat to human and animal health, in addition to environmental resilience. Countries set the agenda on thei…

Are you interested in how your genomics work can meaningfully feed into addressing the UK National Action Plan on AMR? 🧬🧫 πŸ¦ πŸ’Š Then check out our handy personal view out today in Lancet Microbe … 🧡1/n
www.sciencedirect.com/science/arti...

04.03.2026 14:51 β€” πŸ‘ 19    πŸ” 12    πŸ’¬ 1    πŸ“Œ 0
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New personal view article

The role of microbial genomics in delivering the UK’s national action plan for confronting antimicrobial resistance 2024–29

www.thelancet.com/journals/lan...

#IDSky #ClinMicro #AMR #OpenAccess #OA

04.03.2026 12:35 β€” πŸ‘ 20    πŸ” 18    πŸ’¬ 2    πŸ“Œ 0

Many thanks to lead authors @drtessjohnson.bsky.social and @lewiscemason.bsky.social team @target-amr.bsky.social and our wonderful stakeholders who joined in and shared their invaluable views and experiences! 7/n

04.03.2026 14:59 β€” πŸ‘ 3    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
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... and please be sure to particularly consider the 10 policy-led high priority research questions in Theme 3 so we can deliver the research we need to tackle AMR! 6/n

04.03.2026 14:57 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Check out the paper to see how your genomics activities can contribute to delivering the UK AMR NAP themes … 5/n

04.03.2026 14:57 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
TargetAMR – Reducing AMR through Genomics

For that reason @target-amr.bsky.social held a stakeholder meeting to map genomics to the themes and research priorities of the UK NAP (The UKRI AMR networks are actually part of the NAP – Theme 3, Outcome 7) ☝️Don't forget to join TARGetAMR while you visit our website 4/n www.targetamr.org.uk

04.03.2026 14:56 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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The Action Plan is comprised of nine outcomes over four themes and while it mentions UK strengths in genomics and the potential of the technology, it doesn’t explicitly map out where it should be put to use 3/n

04.03.2026 14:54 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Confronting antimicrobial resistance 2024 to 2029

AMR is a growing public health crisis and in line with WHO advice many countries have developed National Action Plans for how to address the challenge. The more recent UK NAP runs from 2019 – 2024 2/n
bit.ly/4b5A8wn

04.03.2026 14:52 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
Preview
The role of microbial genomics in delivering the UK’s national action plan for confronting antimicrobial resistance 2024–29 Antimicrobial resistance (AMR) is a major threat to human and animal health, in addition to environmental resilience. Countries set the agenda on thei…

Are you interested in how your genomics work can meaningfully feed into addressing the UK National Action Plan on AMR? 🧬🧫 πŸ¦ πŸ’Š Then check out our handy personal view out today in Lancet Microbe … 🧡1/n
www.sciencedirect.com/science/arti...

04.03.2026 14:51 β€” πŸ‘ 19    πŸ” 12    πŸ’¬ 1    πŸ“Œ 0
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Late breaker poster abstract submission is still open y'all - can't wait to see everyone in Paris in ... 62 days!!!!!! www.shigella2026.conferences-pasteur.org/call-for-abs...

17.02.2026 19:15 β€” πŸ‘ 4    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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πŸš€ Happening this week!
🧬 Dive into the TyphiNET AMR surveillance dashboard with Dr Zoe Dyson, LSHTM
🦠 Discover how genomics data is powering public health insights
βž• Featuring an ECR talk from Dr Parul Sharma, Emory University
πŸ“… Thurs 5 Feb @ 12pm GMT
πŸ”— Register: www.targetamr.org.uk/hdrevents/th...

02.02.2026 09:46 β€” πŸ‘ 0    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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πŸ“’ Call for Abstracts!
πŸ“Š We're now accepting abstract submissions for Lightning Presentations at the TARGetAMR Conference 2026! 🧠
πŸ“… Deadline: Friday 20th March, 5pm GMT
πŸ”— Submit yours here: www.targetamr.org.uk/now-open-cal...
#TARGetAMR26

03.02.2026 11:33 β€” πŸ‘ 2    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0

Anyone else stuck in some sort of time warp today??? β³πŸ•°οΈβ°β±οΈβŒš I have so far received an APC invoice for a paper published in 2021 and a Research fish reporting request for a grant that ended in 2020

23.01.2026 16:42 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Dr. Alice Gauthey, a Newton International Fellow, standing in a forest, smiling at the camera and holding a leaf. A quote about establishing early-career research independence appears next to her, attributed to her and mentioning The Royal Society: "I wanted to establish greater independence as an early-career researcher. The Newton International Fellowship provided both the time and the resources to develop a strong research portfolio."

Dr. Alice Gauthey, a Newton International Fellow, standing in a forest, smiling at the camera and holding a leaf. A quote about establishing early-career research independence appears next to her, attributed to her and mentioning The Royal Society: "I wanted to establish greater independence as an early-career researcher. The Newton International Fellowship provided both the time and the resources to develop a strong research portfolio."

The Royal Society's Newton International Fellowships are now open for applications, aimed at non-UK early career scientists who wish to conduct research in the UK. Find out more and apply by 11 March: #RSGrants https://royalsociety.org/grants/newton-international/

15.01.2026 15:56 β€” πŸ‘ 10    πŸ” 17    πŸ’¬ 1    πŸ“Œ 1
Research Coordinator (Part Time, Fixed Term) The Pathogen Dynamics Unit, located within the Department of Genetics in central Cambridge, is looking to recruit a part-time Research Coordinator to join our growing team of researchers carrying out

@pducambridge.bsky.social is looking for a new lab administrator (0.5 FTE) - come and join in pushing forward our research and impact in infectious disease! www.cam.ac.uk/jobs/researc...

15.01.2026 10:02 β€” πŸ‘ 5    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
Antimicrobial Resistance – Genomes, Big Data and Emerging Technologies β€” 20260323 Highlighting the importance of genomic data in the fight against AMR

Dear #AMR #genomics and big data community: please be informed that the programme of the Wellcome AMR conference in Hinxton on March 23-26th is now online: coursesandconferences.wellcomeconnectingscience.org/event/antimi... - please register before Feb 24th for onsite participation

14.01.2026 10:39 β€” πŸ‘ 7    πŸ” 7    πŸ’¬ 0    πŸ“Œ 1
Headshots of Yontan Grad (left) and Jeff Imai-Eaton (right) with a dark green background and graphics.

Headshots of Yontan Grad (left) and Jeff Imai-Eaton (right) with a dark green background and graphics.

We are excited to announce that as of January 1st @yhgrad.bsky.social is the new Director of @ccdd-hsph.bsky.social, joining him is @jeff-imai-eaton.bsky.social, as Associate Director. Join us in congratulating Yonatan and Jeff in their new roles!

➑️ Learn about CCDD: www.youtube.com/watch?v=9URu...

13.01.2026 19:46 β€” πŸ‘ 25    πŸ” 4    πŸ’¬ 3    πŸ“Œ 0
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Home - EMBO Workshop Shigella: from biology to prevention EMBO Workshop Shigella: from biology to prevention

Just two more days to submit your abstracts to the @shigellameeting.bsky.social - can't wait to see everyone there! www.shigella2026.conferences-pasteur.org/home

12.01.2026 09:34 β€” πŸ‘ 6    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
AIR 2026: Genomic and Systems Approaches to Respiratory Infection, Microbiomes and Immunity β€” 20260211 Course exploring how genomics, microbiome profiling, and systems biology reshape our understanding of respiratory infections and immune dynamics.

🫁 AIR 2026 registration closing 19th Jan

Focused on respiratory infection, microbiomes and immunity, with amazing speakers.
Incl genomics, single-cell, spatial and systems approaches.

πŸ“ Wellcome Genome Campus
πŸ“… 11–14 Feb

coursesandconferences.wellcomeconnectingscience.org/event/air-20...

08.01.2026 15:31 β€” πŸ‘ 4    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0

Happy New Year Shigellophiles! There's only 105 days to go ... don't forget to get your abstract in!

05.01.2026 17:05 β€” πŸ‘ 2    πŸ” 3    πŸ’¬ 0    πŸ“Œ 1

Yes, but I had to do a bit of work today ... definitely, definitely going offline now though πŸ˜† Have a good one Jesse!

22.12.2025 21:04 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

It’s that magical time of year πŸ₯³ when we delete all work apps from our phones πŸ™Œ Happy holidays everyone, and catch you in 2026! Oh, and don’t forget to register for the @shigellameeting.bsky.social

19.12.2025 21:12 β€” πŸ‘ 8    πŸ” 1    πŸ’¬ 2    πŸ“Œ 0
Starting survey...

πŸ“£ UKHSA survey on gonorrhoea testing practices in England

UKHSA is inviting sexual health services & diagnostic labs to take part in a national survey on current gonorrhoea testing practices across England.

⏱️ 15 minutes
πŸ—“οΈ Deadline: 14 Jan 2026
πŸ”— Take part here: surveys.ukhsa.gov.uk/s/sg01bo

18.12.2025 18:58 β€” πŸ‘ 4    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
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The final piece of my PhD work is now published in Science Translational Medicine! We present a new framework to jointly infer epidemiological and antigenic parameters from multi-pathogen population serological studies🦠

www.science.org/stoken/autho...

18.12.2025 10:04 β€” πŸ‘ 32    πŸ” 13    πŸ’¬ 1    πŸ“Œ 1

We are recruiting for a number of PhDs in the HPRU in Public Health Genomics, based at @unibirmingham.bsky.social, in collaboration with UKHSA. 🦠🧬

Apply below to work on cutting-edge science and public health priorities! (NB deadline of 9th January / UK only due to funding restrictions)
(1/7)

16.12.2025 18:50 β€” πŸ‘ 9    πŸ” 19    πŸ’¬ 1    πŸ“Œ 3

Come and visit me in Paris! #Shigella2026 - travel bursaries deadline tomorrow. Submit your abstracts at www.shigella2026.conferences-pasteur.org/home

15.12.2025 20:36 β€” πŸ‘ 6    πŸ” 5    πŸ’¬ 0    πŸ“Œ 1

Travel bursary deadline closing tomorrow - get your abstracts in December 16!

15.12.2025 20:34 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Work on respiratory immunology or microbes? Interested in big data, omics or the latest in vitro models?... Treat your lab to a christmas present of AIR 2026 registration!

Feb 11th-13th, registration closing soon:
coursesandconferences.wellcomeconnectingscience.org/event/air-20...

11.12.2025 12:41 β€” πŸ‘ 4    πŸ” 7    πŸ’¬ 1    πŸ“Œ 0

Attending ESCMID global and want to go to #Shigella2026 afterward? There are several direct flights a day from Munich to Paris www.skyscanner.net or why not reduce your carbon footprint and take in the European countryside by train www.raileurope.com/en? Most options <Β£100 See you there!

12.12.2025 15:43 β€” πŸ‘ 6    πŸ” 2    πŸ’¬ 0    πŸ“Œ 1

Get the dates in your calendars guys: June 27 - July 2 2027 for the GRC in Microbial Population Biology 🧬 🧫 🌴

10.12.2025 16:09 β€” πŸ‘ 9    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0