Kate Baker's Avatar

Kate Baker

@ksbakes.bsky.social

Prof @cambridgebiosci.bsky.social Genomic epidemiologist connecting pathogen evolution with public health outcomes. #Shigella and #AMR enthusiast. Views own. http://gen.cam.ac.uk/baker-group also www.pdu.gen.cam.ac.uk also @pducambridge.bsky.social

2,103 Followers  |  530 Following  |  166 Posts  |  Joined: 04.11.2023  |  1.9992

Latest posts by ksbakes.bsky.social on Bluesky

These two things aren’t mutually exclusive: open.spotify.com/track/5NS0ip...

04.12.2025 08:31 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Excited for Thursday!

02.12.2025 18:32 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Human Microbiome: From Models and Mechanism to Medicine | Keystone Symposia Join us at the Keystone Symposia on Human Microbiome: From Models and Mechanism to Medicine, January 2026, in Banff, with field leaders!

Poster deadline for the Keystone Microbiome Meeting in Banff is December 30th www.keystonesymposia.org/conferences/...

Will be a great meeting focused on human microbiomes, spanning basic, mechanistic, and applied. Organized by myself, @amibhatt.bsky.social , and Harry Sokol. Join us!

01.12.2025 18:35 β€” πŸ‘ 9    πŸ” 12    πŸ’¬ 0    πŸ“Œ 0

These are gold

01.12.2025 19:45 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

It's never good news with gonorrrhea, is it πŸ’Š 🧫

26.11.2025 12:58 β€” πŸ‘ 5    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

Twitching was like PokΓ©mon Go before there was PokΓ©mon Go … minus the battles I guess πŸ¦… 🦒 🐦

26.11.2025 07:52 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Okay, it's the start of the academic year and there have been further funny (and some frustrating) mix ups ... just a gentle reminder that there are two of us - try to make sure you have the right one ...

26.11.2025 07:21 β€” πŸ‘ 18    πŸ” 1    πŸ’¬ 2    πŸ“Œ 0
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Graphic Novel Builder: The illustrated guide to making your own comics β€” Edward Ross A comic book…about making comic books! The perfect gift for budding artists and aspiring storytellers. Written and illustrated by comic artist Edward Ross with an introduction by Alice Oseman, creat...

Encourage creativity and storytelling for young folk 9+ with a copy of Graphic Novel Builder: the illustrated guide to making your own comics! With an intro by Alice Oseman! ✏️

www.edwardross.co.uk/shop/p/graph...

25.11.2025 12:31 β€” πŸ‘ 11    πŸ” 8    πŸ’¬ 0    πŸ“Œ 0
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High frequency body site translocation of nosocomial Pseudomonas aeruginosa - Nature Communications Here, the authors report within-host diversity and body site translocation dynamics in hospital samples of Pseudomonas aeruginosa and reveal that body site sharing was likely due to within-patient tra...

Really pleased to share the first paper to come out of the lab.
We found that hospital patients were frequently colonised with P. aeruginosa and that the same clone was shared between the gut and the lung.
The phylogenies indicate that the clones moved from lung->gut

www.nature.com/articles/s41...

25.11.2025 10:40 β€” πŸ‘ 65    πŸ” 33    πŸ’¬ 2    πŸ“Œ 4

Adding fomo - heavy teaching week

24.11.2025 20:24 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I have a wonderful colleague who calls these things out by saying β€œIt’s interesting you think that, what makes you think that?”

24.11.2025 20:17 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Normally I would agree with this but it’s 2025 and the 30th of November is right there. A conveniently located Sunday. It’s gonna happen people.

21.11.2025 20:33 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Call for abstracts - EMBO Workshop Shigella: from biology to prevention EMBO Workshop Shigella: from biology to prevention

#Abstract submissions are open for The #Shigella Meeting! If you would like to be considered for a #travel #grant, abstracts are due December 16, 2025. Regular submissions due January 14, 2026. Show us your #science!
@shigellameeting.bsky.social
🦠 πŸ§«πŸ”¬ #Microsky #IDsky

21.11.2025 01:22 β€” πŸ‘ 11    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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Home - EMBO Workshop Shigella: from biology to prevention EMBO Workshop Shigella: from biology to prevention

Don't forget to register for the #1st ever @shigellameeting.bsky.social at Pasteur next year! Apr 20 - 24 www.shigella2026.conferences-pasteur.org/home

20.11.2025 15:37 β€” πŸ‘ 6    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

This #WAAW Don’t forget to get your awesome AMR abstracts submitted to join us in Hinxton to discuss AMR genomics, innovations in diagnostics,
therapeutics, and data analytics, and novel mechanisms of antimicrobial survival! #AMR2026

19.11.2025 18:00 β€” πŸ‘ 13    πŸ” 7    πŸ’¬ 0    πŸ“Œ 0

This #WAAW Don’t forget to get your awesome AMR abstracts submitted to join us in Hinxton to discuss AMR genomics, innovations in diagnostics,
therapeutics, and data analytics, and novel mechanisms of antimicrobial survival! #AMR2026

19.11.2025 18:00 β€” πŸ‘ 13    πŸ” 7    πŸ’¬ 0    πŸ“Œ 0

Happy to share our new AMR resource which has phenotypic AMR (usually MIC data) collected from publications and databases. This is paired with assemblies and annotations

We're excited for users who might train new models, find phenotype/genotype mismatches, or any other use

19.11.2025 12:27 β€” πŸ‘ 56    πŸ” 33    πŸ’¬ 1    πŸ“Œ 0
University College Cork Vacancies

🚨Job claxon 🚨

University College Cork is looking to appoint a lecturer in Medical Microbiology into a permanent, non-clinical post

A great opportunity in a microbiology powerhouse

For details go to my.corehr.com/pls/uccrecru... and enter reference number 092153

18.11.2025 22:55 β€” πŸ‘ 11    πŸ” 22    πŸ’¬ 0    πŸ“Œ 0
2026-27 Project (Dyson & Mostowy & Knight) - MRC London Intercollegiate Doctoral Training Partnership Studentships PHACTS: Unravelling PHAge-baCTeria-host immune dynamicS to inform phage therapy SUPERVISORY TEAM Supervisor Dr Zoe Dyson...

London interdisciplinary #PhD position now open with myself, @sergemostowylab.bsky.social, & @gmknght.bsky.social on #phage -bacteria-host immune dynamics for WHO priority bacterial pathogens #Klebsiella, #Shigella, and #Staph. Combines cellular microbiology, genomics, & mathematical modelling.

13.11.2025 11:11 β€” πŸ‘ 9    πŸ” 13    πŸ’¬ 0    πŸ“Œ 1
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Know metagenomics and could spare 2 mins? I'm applying for funding to build a visual repository for metagenomic classification data (not sequence data). To support the application, I have a short 2 minute survey and it would be a big help if you could fill it in: docs.google.com/forms/d/e/1F...

12.11.2025 12:00 β€” πŸ‘ 2    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
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If you’re at @astmh.bsky.social #ASTMH2025 check out our session today on Enteric Pathogen Genomics & Evolution (room 717, 16:30) featuring @ksbakes.bsky.social on Shigella, plus 2 other great talks on V. cholerae phages, and Salmonella!

10.11.2025 14:04 β€” πŸ‘ 13    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

For anyone else whose Mac Outlook 365 has started making regular, massive faux pas through Autocorrect recently: Start typing new email > Edit > Spelling and Grammar > uncheck 'Correct Spelling Automatically'. Literally just called a new collaborator Baby because of this ... πŸ™„

10.11.2025 12:29 β€” πŸ‘ 14    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Yes, but they mysteriously gained it back over the next two days as the dye leaked into the white choc!

31.10.2025 17:09 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Of course!

31.10.2025 17:08 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Are you hungry for some Shigella news? Why not come to the 1st International Shigella meeting www.shigella2026.conferences-pasteur.org/home 20-24 April 2026 Paris

29.10.2025 18:29 β€” πŸ‘ 39    πŸ” 3    πŸ’¬ 3    πŸ“Œ 2

This πŸ‘‡ πŸ‘‡ πŸ‘‡

21.10.2025 21:53 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Funded PhD position available in @langridgelab.bsky.social! Excellent project in a very supportive, driven & knowledgable group 🧬

17.10.2025 07:26 β€” πŸ‘ 2    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

The lack of a unified patient voice for AMR (because of the diverse and complex nature of the problem) definitely makes research and progress in the area more challenging

16.10.2025 07:28 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

If it were GDP we would definitely refer to 5% - 15% as booming … maybe we’re in a booming pandemic of AMR

15.10.2025 16:58 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Can we stop calling it a slow pandemic yet?

15.10.2025 16:51 β€” πŸ‘ 16    πŸ” 6    πŸ’¬ 2    πŸ“Œ 0

@ksbakes is following 20 prominent accounts