Kate Baker's Avatar

Kate Baker

@ksbakes.bsky.social

Prof @Cambridge_Uni Genomic epidemiologist. #Shigella and #AMR enthusiast. Views own. http://gen.cam.ac.uk/baker-group also www.pdu.gen.cam.ac.uk also @pducambridge.bsky.social

2,075 Followers  |  527 Following  |  145 Posts  |  Joined: 04.11.2023  |  2.4267

Latest posts by ksbakes.bsky.social on Bluesky

Preview
Versatile NTP recognition and domain fusions expand the functional repertoire of the ParB-CTPase fold beyond chromosome segregation Nucleotide triphosphate (NTP)-dependent molecular switches regulate essential cellular processes by cycling between active and inactive states through nucleotide binding and hydrolysis. These mechanis...

new preprint from our group & Antoine Hocher: www.biorxiv.org/content/10.1...
A fantastic collaboration with Antoine, with Jovana Kaljevic' initiated the collaboration and drives the project.

11.10.2025 11:36 β€” πŸ‘ 60    πŸ” 33    πŸ’¬ 2    πŸ“Œ 3
AIR 2026: Genomic and Systems Approaches to Respiratory Infection, Microbiomes and Immunity β€” 20260211 Course exploring how genomics, microbiome profiling, and systems biology reshape our understanding of respiratory infections and immune dynamics.

New respiratory 🫁 infection and microbiomes conference in Hinxton with stellar line up of speakers.

🚨 Submit your abstracts now! 🚨

Please RT

coursesandconferences.wellcomeconnectingscience.org/event/air-20...

08.10.2025 14:48 β€” πŸ‘ 13    πŸ” 9    πŸ’¬ 3    πŸ“Œ 0

This is why we fund scientists to study things like oyster slobber even if you don’t think it sounds important

30.09.2025 22:34 β€” πŸ‘ 16890    πŸ” 6385    πŸ’¬ 165    πŸ“Œ 96
woman writing on a flipchart. Text highlighting that our next self-leadership for women scientists online course on 14-16 October still has places available

woman writing on a flipchart. Text highlighting that our next self-leadership for women scientists online course on 14-16 October still has places available

The @embo.org self-leadership for women scientists course focuses on 4 pillars of experience as a human being + researcher: self-awareness, self-acceptance, self-management + self-growth. Places still available on 14-16 October online course: www.embolableadership.org/course/self-... #SelfLeadership

25.09.2025 13:21 β€” πŸ‘ 5    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0
Equity in science is a beautiful lie β€” and I’m done pretending | Nature Science isn’t really moving towards equity; institutions are just perfecting the appearance of equity. We need to build an alternative system. Science isn’t really moving towards equity; institutions are just perfecting the appearance of equity. We need to build an alternative system.

I can’t promise this will be the last time I talk about inequity β€” or equity washing β€” in science. But after the multitude of responses to my Nature piece, I know something has shifted. Many came from the Global North. That alone feels like a small win. πŸ‘‰ rdcu.be/eGEun

29.09.2025 07:13 β€” πŸ‘ 24    πŸ” 7    πŸ’¬ 3    πŸ“Œ 2
Preview
Assistant Professor, Tenure-Track, Department of Biology, University of San Francisco Job Title: Assistant Professor, Tenure-Track, Department of Biology, University of San Francisco Job Summary: The Department of Biology at the University of San Francisco invites applications for a fu...

Tenure-track Assistant Professor position in Bioinformatics in the Department of Biology at the University of San Francisco
usfca.wd5.myworkdayjobs.com/en-US/USF_Fu...

27.09.2025 11:55 β€” πŸ‘ 71    πŸ” 91    πŸ’¬ 1    πŸ“Œ 1

Microsoft Outlook just told me some of my attachments are "pretty large" and asked if I wanted to upload to OneDrive instead. How come you're allowed to use superfluous adverbs Outlook while all my "really"s and "very"s get your snooty little blue line?!

27.09.2025 16:26 β€” πŸ‘ 43    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0

A great opportunity to attend the #Shigella meeting April 20-24, 2026! Abstract submissions are open! @shigellameeting.bsky.social #Microsky

27.09.2025 12:03 β€” πŸ‘ 7    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0

Why not apply for a Microbiology Society grant to support your attendance at @shigellameeting.bsky.social?

microbiologysociety.org/grants/all-g...

26.09.2025 11:24 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Awesome news Siobhan! Congratulations!

26.09.2025 03:29 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

Delighted to see our paper studying the evolution of plasmids over the last 100 years, now out! Years of work by Adrian Cazares, also Nick Thomson @sangerinstitute.bsky.social - this version much improved over the preprint. Final version should be open access, apols.
Thread 1/n

25.09.2025 21:28 β€” πŸ‘ 299    πŸ” 153    πŸ’¬ 14    πŸ“Œ 8

Dang - should have aligned our @target-amr.bsky.social in person!

25.09.2025 04:42 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

Newly expanded version of my guide to scientific writing -- known as the β€œ15 steps” -- published in PLOS Computational Biology. Special thanks to Γ‰ric Marty for creating a fantastic visualization.

Check it out: journals.plos.org/ploscompbiol...

#ScientificWriting #PLOSComputationalBiology

24.09.2025 17:54 β€” πŸ‘ 37    πŸ” 21    πŸ’¬ 1    πŸ“Œ 2
Preview
Faculty Professor Associate - Full-Time | Vaughn Cooper We are recruiting Faculty microbiologists in three (3) different, complementary, and collaborative areas at the University of Pittsburgh associated with the School of Medicine. 1) Fundamental researc...

🚨 Microbiologists! We are recruiting Assistant / Associate Professors in 3 collaborative areas of our U. Pittsburgh School of Medicine.
1) MMG (my dept): fundamental research in med micro
2) Peds ID / I4Kids institute
3) Center for Vaccine Research
πŸ”— to all 3 w/info: www.linkedin.com/posts/vaughn...

23.09.2025 22:31 β€” πŸ‘ 93    πŸ” 127    πŸ’¬ 1    πŸ“Œ 6
Job Details

Come and work with Nicole Stoesser and I in Oxford with the fantastic team @modmedmicro.bsky.social - great opportunity for a postdoc in microbial genomics to do some creative research with great datasets as part of our HPRU.

my.corehr.com/pls/uoxrecru...

23.09.2025 09:47 β€” πŸ‘ 2    πŸ” 8    πŸ’¬ 0    πŸ“Œ 1

Output != Productivity, which is a measure of efficiency, and the first Figure in this paper seems to suggest that women actually produce more papers per year than men (albeit from a disadvantaged starting point, x-axis is years in research). Graphical abstract also seems misleading on this.

20.09.2025 18:40 β€” πŸ‘ 7    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

x-axis is years in research

20.09.2025 18:30 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Registration & abstract submissions are open for the #Shigella meeting! Travel grants available too! All are welcomed, whether you are active in #Shigella research or interested in the 21st century perspective on this formidable pathogen! 🦠 🧫 #Microsky
www.shigella2026.conferences-pasteur.org/home

19.09.2025 01:12 β€” πŸ‘ 5    πŸ” 7    πŸ’¬ 0    πŸ“Œ 0

Introducing AMR cartography - work by Andrew Balmer

17.09.2025 08:28 β€” πŸ‘ 5    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0

We will be talking about our favorite microorganism #Shigella at the @shigellameeting.bsky.social in April 2026! 🦠 🧫
@ksbakes.bsky.social @sergemostowylab.bsky.social @marteynlab.bsky.social

17.09.2025 15:21 β€” πŸ‘ 8    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
Post image

Come and join us at @shigellameeting.bsky.social in Paris 2026. Registrations are now open! www.shigella2026.conferences-pasteur.org/home and follow the Shigella starter pack go.bsky.app/6Vbwhjc (message to be added)! 215 days to go!

17.09.2025 11:57 β€” πŸ‘ 18    πŸ” 9    πŸ’¬ 2    πŸ“Œ 1

It’s nearly that time of year again πŸŽƒ πŸ‘» πŸ¦‡ please give me your best scary book recommendations blueskyers πŸ“•

16.09.2025 12:42 β€” πŸ‘ 7    πŸ” 2    πŸ’¬ 5    πŸ“Œ 1
Preview
Investigating pathogenicity in zoonotic Streptococcus suis at University of Cambridge on FindAPhD.com PhD Project - Investigating pathogenicity in zoonotic Streptococcus suis at University of Cambridge, listed on FindAPhD.com

www.findaphd.com/phds/project...

15.09.2025 18:43 β€” πŸ‘ 6    πŸ” 15    πŸ’¬ 0    πŸ“Œ 1

Keeps us on our toes… and another compelling argument for genomic surveillance and agile systems!

14.09.2025 13:14 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Preview
Rise and fall of the new variant of Chlamydia trachomatis in Sweden: mathematical modelling study Objectives A new variant of Chlamydia trachomatis (nvCT) was discovered in Sweden in 2006. The nvCT has a plasmid deletion, which escaped detection by two nucleic acid amplification tests (Abbott-Roch...

(Alluding to what happened for chlamydia in Sweden πŸ‡ΈπŸ‡ͺ for those new to the area sti.bmj.com/content/96/5...)

14.09.2025 06:47 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

History repeats itself: more disappearing STIs from molecular target mutation 😬 Great πŸ•΅οΈ work by @sarah1alexander.bsky.social and colleagues!

14.09.2025 06:45 β€” πŸ‘ 8    πŸ” 3    πŸ’¬ 2    πŸ“Œ 0

Anyone else currently in Ghent to learn about phage proteins?

10.09.2025 06:43 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 2    πŸ“Œ 0

I really enjoyed chatting about our new study on CoV with Dr Norman Swan on ABC Radio National’s Health Report this week- great to discuss the work with a journalist with specific expertise!

www.abc.net.au/listen/progr...

26.07.2025 22:45 β€” πŸ‘ 11    πŸ” 7    πŸ’¬ 1    πŸ“Œ 0

Willing to join us @pasteur.fr for a PhD for a project on how interactions between mobile genetic elements shape bacterial adaptation? Subject to be tailored to candidates with keen interest in evolution, genomics, computational biology, microbiology. Check www.pasteur.fr/en/education...

08.09.2025 08:56 β€” πŸ‘ 45    πŸ” 58    πŸ’¬ 0    πŸ“Œ 0
Preview
Assistant Professor (Research and Education) in Bacterial Genomics at University of Birmingham Looking for a new job opportunity in academia? Check out this job opening for a Assistant Professor (Research and Education) in Bacterial Genomics on jobs.ac.uk!

Reminder that we are recruiting an Assistant Professor Bacterial Genomics @imibirmingham.bsky.social.

www.jobs.ac.uk/job/DOO184/a...

Deadline 24 Sept.

06.09.2025 20:08 β€” πŸ‘ 18    πŸ” 28    πŸ’¬ 0    πŸ“Œ 0

@ksbakes is following 20 prominent accounts