Zhen-Qi Liu

Nine subcortical/cerebellar atlases included in the subcortex_visualization Python package (and subcortexVisualizationR package in R). The atlases are depicted in two-dimensional vector graphic format.

The extended version of my thesis procrastination project/subcortex visualization package is out now in both Python and R, now that I’ve graduated 🤠 This figure shows the 9 atlases included (and counting)!

Preprint: www.biorxiv.org/content/10.6...
Website: anniegbryant.github.io/subcortex_vi...

netneurotools: a trainee-oriented approach to network neuroscience | doi.org/10.1101/2025...

Our lab’s internal toolkit for accomplishing everyday tasks in brain imaging ⤵️

Human cortical networks trade communication efficiency for computational reliability. https://www.biorxiv.org/content/10.64898/2025.12.11.693716v1

Cognitive cartography of mammalian brains using meta-analysis of AI experts The complexity of the brain is increasingly mirrored by the complexity of the neuroscientific literature, yet no individual mind can fully grasp the diversity of scales, methodologies and model organi...

🧠 Excited to share our latest preprint: Automated Brain Mapping with AI Experts!🤖

www.biorxiv.org/content/10.6...

Ever wanted to summarise the cognitive/systems neuroscience literature beyond MRI and PET? Ever wished we could do the same for macaque 🐒 and mouse 🐭 ? Read on! 🧵👇

Multivariate Resting-State Functional Connectivity Features Linked to Transdiagnostic Psychopathology in Early Psychosis Early psychosis (EP) is characterized by neurobiological changes, including alterations in resting-state functional connectivity (RSFC). We now understand that symptoms and neural changes may overlap ...

New from @haleyrwang.bsky.social: Multivariate Resting-State Functional Connectivity Features Linked to Transdiagnostic Psychopathology in Early Psychosis - Biological Psychiatry www.biologicalpsychiatryjournal.com/article/S000...

Toward a unified taxonomy of information dynamics via Integrated Information Decomposition | PNAS Our ability to understand and control complex systems of many interacting parts remains limited. A key challenge is that we still do not know how b...

Finally published:
“Toward a unified taxonomy of information dynamics via Integrated Information Decomposition”
www.pnas.org/doi/10.1073/...

An information-theoretic framework to analyse complex multivariate dynamical processes ✨

Excited to share that our work introducing the Reproducible Brain Charts (RBC) data resource is now published in Neuron!! 🎉

📚 Read the paper: authors.elsevier.com/c/1lpaF3BtfH...
🧠 Explore the RBC dataset: reprobrainchart.github.io

Neuromorphic hierarchical modular reservoirs | doi.org/10.1101/2025...

How does hierarchical modularity shape computational function? ⤵️

Network spreading and local biological vulnerability in amyotrophic lateral sclerosis |
doi.org/10.1038/s420...

How do brain network structure and local biological features shape the spatial patterning of atrophy in ALS? @asafarahani.bsky.social investigates ⤵️

netneurotools: a trainee-oriented approach to network neuroscience https://www.biorxiv.org/content/10.1101/2025.09.09.675160v1

The effect of spherical projections on spin tests for brain maps | doi.org/10.1162/IMAG...

Spin tests are the de facto null model for map-to-map comparisons in brain imaging. Why don't they perfectly control false positives? @vincebaz.bsky.social explores ⤵️

Integrating and interpreting brain maps | doi.org/10.1016/j.ti...

Imaging and recording technologies make it possible to map multiple biological features of the brain. How can these features be conceptually integrated into a coherent understanding of brain structure and function? ⤵️

Normative blood perfusion map on lateral and medial views of the inflated and 2D flat cortical surfaces (fsLR). Borders and areal names of the multi-modal Glasser parcellation are overlaid on the flat surface. The figure highlights the non-uniform distribution of perfusion scores across the cortex, with areas that have sharp gradient compared to their underlying perfusion score levels (e.g., LIPv and MT/MST).

How does cerebral #BloodPerfusion map onto micro-, meso- & macro-scale brain structure? @asafarahani.bsky.social @misicbata.bsky.social &co characterize blood perfusion in the #HumanBrain, revealing how it changes with age & in #NeurodegenerativeDisease @plosbiology.org 🧪 plos.io/46AEURS

Benchmarking methods for mapping functional connectivity in the brain | doi.org/10.1038/s415...

What is the best measure of functional connectivity (FC)?

led by @zhenqi.bsky.social in @natmethods.nature.com ⤵️

Symposium talk: Integrating brainstem and cortical functional architectures

Friday June 27 3:45pm @ M2

Poster #1198: Synaptome architecture shapes regional dynamics in the mouse brain

Friday + Saturday 1:45-3:45

Poster #1187: Neurotransmission connectomes

Friday + Saturday 1:45-3:45

Poster #1178: A simulated annealing algorithm for randomizing weighted networks

Friday + Saturday 1:45-3:45

Poster #1176: Neuromorphic hierarchical modular reservoirs

Friday + Saturday 1:45-3:45

Poster # 1766: Mapping neuropeptide signaling in the human brain

Friday + Saturday 1:45-3:45

Poster #2122: Comprehensive profiling of anaesthetised brain dynamics across phylogeny

Friday, June 27 | 13:45 -15:45

Talk on Saturday 28th at 12:18

Poster #1618: The impact of spherical projection on spin tests for brain maps

Friday + Saturday 1:45-3:45

Poster #1461: Generative Model of Brain Maps

Friday + Saturday 1:45-3:45

Poster #1188: Netneurotools: an accessible, reproducible, and practical toolkit for network neuroscience

Friday + Saturday 1:45-3:45

Poster #1843: Neuromaps-mouse: integrating multiscale, multimodal annotations across the mouse brain

Friday + Saturday 1:45-3:45

Symposium talk: Benchmarking methods for mapping functional connectivity in the brain

Friday, Jun 27: 3:45 PM - 5:00 PM

Poster #1386: Benchmarking methods for mapping functional connectivity in the brain

Friday + Saturday 1:45-3:45

NetNeuroLab posters + talks at @ohbmofficial.bsky.social

synapse types! neurotransmission connectomes! mouse maps! neuromorphic networks! generative models! neuropeptides! ⤵️

Benchmarking methods for mapping functional connectivity in the brain - Nature Methods In this Analysis, Liu et al. benchmark more than 200 pairwise statistics for functional brain connectivity in tasks such as hub mapping, distance relationships, structure–function coupling and behavio...

An Analysis of 200 pairwise statistics for functional brain connectivity in tasks such as hub mapping, distance relationships, structure-function coupling and behavior prediction highlights their effectiveness for neurophysiological applications.

www.nature.com/articles/s41...

RELEASE THE KRAKEN(CODER)!
Ever struggle deciding which connectome pipeline to use or want to map between structure and function? Our multi-modal connectome mapping and fusion tool-the Krakencoder-can help! Brilliant Keith Jamison led this work, code available! www.nature.com/articles/s41...