Gareth (Gary) Trubl

Illustration depicting a bacterium under assault by phage. The bacterium “sees” phage immune evasion proteins and protects itself using a newly described antiphage system called Panoptes, named for the many-eyed mythical giant Argus Panoptes. Credit: Clair Huffine Insight Illustrations LLC

Our work on the Panoptes antiphage system is published! Here we find that Panoptes "watches" the cytosol for phage immune evasion proteins–captured in this illustration by Clair Huffine of Insight Illustrations. A beautiful example of the effector triggered immunity paradigm.

I have a fabulous undergrad who has a lot of experience with QIIME2 & using R to analyze microbiome data. She is looking for a job starting in January. Would love to learn more bench and field skills (will be getting some in her last 2 months). Open to academic, industry, government jobs in the US.

I know. I always support open access, but it was over 4K & we do not currently have the funds for that. I did put a preprint before on Zenodo which is updated doi.org/10.5281/zeno...

Same! Now, let's see if I still get requests to do "16S metagenomics"...ugh.

Clarifying Terminology in Microbial Ecology: A Call for Precision in Scientific Communication The rapid evolution of microbiology as a field of research has led to the introduction of new terminology and the adaptation of existing terms. However, inconsistencies in the use of these terms, inc...

New paper alert with @alexjprobst.bsky.social.

enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...

This Is the Greatest Threat to Our Human Future Co-authors Michael Mann and Peter Hotez share 5 key insights from their new book, Science Under Siege: How to Fight the Five Most Powerful Forces that Threaten Our World.

“This Is the Greatest Threat to Our Human Future” | @peterhotezmdphd.bsky.social and I discuss with @nextbigidea.bsky.social about our new book, #ScienceUnderSiege:

nextbigideaclub.com/magazine/gre...

Baker Institute

Register today www.bakerinstitute.org/event/scienc...

Super team of physicians, scientists, and public health experts come together with a single message: RFK must go.

"It is time to reverse course and begin rebuilding the public health infrastructure overseen by CDC. Kennedy has proven himself unwilling and ill-prepared to lead that effort. "

👇

The CDC shooting was public health’s Jan. 6 “In RFK Jr.’s America, it will never be safe to practice public health or medicine," write an epidemiologist and a former CDC staffer.

This point isnt being made enough. Last week’s attack on the #CDC could have been a slaughter.
www.statnews.com/2025/08/15/c...

Save the Date! Sept. 9 @ 12pm. @bakerinstitute.bsky.social with @stpolicy.bsky.social will host Drs. @peterhotezmdphd.bsky.social & @michaelemann.bsky.social to discuss their new book, "Science Under Seige". Come hungry, lunch will be served!

Register here: www.bakerinstitute.org/event/scienc...

Bacteriophage replication strategies are associated with organic matter energy content on coral reefs Bacteriophages, viruses that infect bacteria, play a crucial role in carbon cycling within marine environments. In coral reefs, dissolved organic matter (DOM) released by benthic primary producers suc...

Bacteriophage replication strategies are associated with organic matter energy content on coral reefs

Amazing work from the @cynthiasilveira.bsky.social lab

#phagesky

doi.org/10.1101/2025...

3 panel meme. Cartoon person holding an onion and a knife. They’re saying “this onion won’t make me cry.” 2nd panel, the onion says “you didn’t sign up for Binning Singletons in time to get a Bin and a Mentor.” Last panel is the person weeping

We help folks at #ASMicrobe, even when they sign up DURING the event. But if you sign up EARLY, you’ll get the FULL benefit of a mentor to ask questions of, as well as a small group you can make plans with ahead of time

binningsingletons.com/singleton/bi...

Going to @asm.org next week? Come see my talk #4216 "Precipitation and Phosphorus Reshape Viral Infections and Virion Stability in Soil Ecosystems" Sun June 6, 9-9:15 AM. I will be highlighting the application of isotope probing with meta-omics to track viruses in soils.

A bacterial CARD-NLR immune system controls the release of gene transfer agents Bacteria have evolved a wide array of immune systems to detect and defend against external threats including mobile genetic elements (MGEs) such as bacteriophages, plasmids, and transposons. MGEs are ...

1/ Excited to share our latest work on gene transfer agents (GTAs) in Caulobacter crescentus, led by Emma Banks in collaboration with Pavol Bardy and Mai Nguyen from York!!! See a brief thread below.
shorturl.at/o6S1w

Federal Jobs, Science, and Anti-Intellectualism: Climate Scientists Speak Out - Non Profit News | Nonprofit Quarterly Behind climate change skepticism lies a deeper challenge—a growing contempt for knowledge and science. This is not a new trend in US society, but it is intensifying.

“Federal Jobs, Science, and Anti-Intellectualism: Climate Scientists Speak Out” by Matthew Rozsa for @npquarterly.bsky.social:

nonprofitquarterly.org/federal-jobs...

Two big Space Science stories today based on NASA missions: JWST biosignatures and Curiosity on the cover of Science. No mention at NASA.gov or social media. Everyone is worried about science cuts yet Public Affairs is incapable of putting its own good news out for policy makers to see. Baffling.

Phosphate amendment drives bloom of RNA viruses after soil wet-up Soil rewetting after a dry period results in a surge of activity and succession in both microbial and DNA virus communities. Less is known about the r…

Our paper is out and is open access!

Phosphate amendment drives bloom of RNA viruses after soil wet-up.

www.sciencedirect.com/science/arti...

@sieravirus.bsky.social @jeffinerca.bsky.social @graemenicol.bsky.social @christinahazard.bsky.social

Nematodes vector bacteriophages in compost and soil Bacteriophages (phages) infect bacteria to reproduce and are often lethal to their host. To maintain the infection cycle, soil phages must travel from…

Phages hitchhiking on nematodes through soil! So happy to see this work in print 😀 #phages #soil

Fun collab with Mark Zwart @niooknaw.bsky.social and Lisa van Sluijs, Hans Helder at @w-u-r.bsky.social www.sciencedirect.com/science/arti...

Beneath the surface: Unsolved questions in soil virus ecology Soil virus ecology is an exciting but still nascent field of research in soil microbiology. While there has been a recent surge in soil virus research…

Our perspective on soil virus ecology research is out!

Fantastic collab with
@christinahazard.bsky.social @karthik-a.bsky.social @lukehillary.bsky.social @urineri.bsky.social @simrouxvirus.bsky.social @gtrubl.bsky.social @KurtWilliams @jeffinerca.bsky.social @graemenicol.bsky.social @JoanneEmerson

Meeting report: International soil virus conference 2024 The research field of soil viral ecology continues to advance rapidly as the roles of viruses in the functioning of soil ecosystems are increasingly r…

Last June, we had an unforgettable International Soil Virus Conference, featuring outstanding presentations & dynamic discussions. Many of our early-career researchers took the lead in distilling the conference into a comprehensive meeting report. www.sciencedirect.com/science/arti...

Utilizing Martian Samples For Future Planetary Exploration: Characterizing Hazards And Resources - Astrobiology One of the most surprising and important findings of the first human landings on the Moon was the discovery of a very fine layer of lunar dust covering the entire surface of Moon

Utilizing Martian Samples For Future Planetary Exploration: Characterizing Hazards And Resources
astrobiology.com/2025/02/util... #astrobiology #Mars

Heat stored in the Earth system: where does the energy go? Abstract. Human-induced atmospheric composition changes cause a radiative imbalance at the top of the atmosphere which is driving global warming. This Earth energy imbalance (EEI) is the most critical...

I don't often give hot takes, but this obsession with turning the 1.5C climate target into an annual benchmark & forgetting that global temperature is responding to only 1% of the heat that's being trapped inside the climate system every year is enough to trigger anyone's internal @andrewdessler.com

A graphic advertising AGU24 in Washington DC 9-13 December 2024, with little images of bongos (?), the washington monument, the magnetic field of the earth, volcanoes, test tubes, the sun, thermometers, weather balloons, wind turbines, crystals and more

If you're not at #AGU24, the largest gathering of earth scientists in the world, and you're feeling some FOMO, don't worry: @kellyhereid.bsky.social has you covered.

Here's her feed of "what's hot at AGU". Just pin and enjoy! bsky.app/profile/did:...

A New Strategy for the Exploration of Venus - Astrobiology The 2023-2032 Planetary Science and Astrobiology Decadal Survey Origins, Worlds, and Life recommended that "NASA develop scientific exploration strategies ... Venus

A New Strategy for the Exploration of Venus - The VEXAG Exploration Strategy Study Analysis Workgroup
astrobiology.com/2024/12/a-ne... #astrobiology #AGU #AGU24 #AGU2024 #Venus #exoplanet #VEXAG

Registration now open for the EMBO Workshop: Immune System of Bacteria !!!!

www.sisb2025.conferences-pasteur.org/home

Joins us in Institut Pasteur, Paris, April 8-10th.

Protecting The Lost City Hydrothermal Vent System - Astrobiology Lost City is a unique marine hydrothermal vent field in Area Beyond National Jurisdiction on the front line of deep-sea features that policy-makers should seek to protect.

Protecting The Lost City Hydrothermal Vent System
astrobiology.com/2023/11/prot... #Astrobiology #hydrothermal #oceanography

These are so cool!

North Carolina State University is hiring a tenure track assistant or associate professor of watershed hydrology! This is a great place to work and live. Details below. 👇
jobs.ncsu.edu/postings/210... #academicJobs #academicSky #PhdChat #AGU24 #NCSU #Forestry #NaturaResources

Formate enhances partial-denitrification and energy production by anammox bacteria in simultaneous anammox-denitrification system Simultaneous anammox-denitrification (SAD) has great potential for achieving deep nitrogen removal in wastewater treatment, but it generally requires …

Formate enhances partial- #denitrification and energy conservation by #anammox bacteria in simultaneous anammox-denitrification system
www.sciencedirect.com/science/arti...