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ForliLab

@forlilab.bsky.social

Molecular Modeling & Drug Design. The lab of Stefano Forli at Dept. of Integrative Structural & Computational Biology at @scripps.edu Home of the AutoDock https://forlilab.org/

46 Followers  |  21 Following  |  7 Posts  |  Joined: 18.11.2024  |  1.3866

Latest posts by forlilab.bsky.social on Bluesky

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Huge congratulations to Dr. Althea Hansel-Harris on successfully defending her thesis, "Virtual Drug Discovery for Cancer Biology"! Best of luck as you return to medical school at UCSD β€” we’re excited to see all the amazing things you’ll accomplish! #dr #futuredrdr

09.04.2025 17:34 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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A Quantitative Analysis of Ligand Binding at the Protein-Lipid Bilayer Interface

For a lay summary of our findings, check out our blog post: communities.springernature.com/posts/a-quan... (5/5)

26.03.2025 17:45 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Our analysis of this dataset revealed that ligands which bind at the protein-lipid interface have distinct properties compared to those that bind to soluble proteins and that atomic properties of these molecules vary significantly depending on their depth in the bilayer (4/5).

26.03.2025 17:45 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

What’s in LILAC-DB?
βœ… 413 structures from the PDB
βœ… 141 unique ligands
βœ… 105 membrane proteins
βœ… Curated ligand–protein–lipid interface annotations (3/5)

26.03.2025 17:45 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Lipid-Interacting LigAnd Complexes Database (LILAC-DB) Lipid-Interacting LigAnd Complexes Database (LILAC-DB) is a high quality dataset of PDB complexes of ligands binding at the protein-lipid bilayer Interface. LILAC-DB contains 231 unique small molecule...

This resource sheds light on drug design targeting lipid-exposed sites, informing drug discovery against otherwise challenging targets! The dataset is available to download here: zenodo.org/records/1483... (2/5)

26.03.2025 17:45 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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A quantitative analysis of ligand binding at the protein-lipid bilayer interface - Communications Chemistry Targeting membrane proteins at sites embedded in the lipid bilayer offers the potential to discover ligands for undruggable targets; however, ligand binding at the protein-membrane interface remains u...

Excited to share our new paper: www.nature.com/articles/s42...! We've compiled the LILAC-DB, a dataset of small molecules bound to membrane proteins at the protein-lipid bilayer interface. (1/5)

26.03.2025 17:45 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Another big publication from @sijiewang.bsky.social this week. Check out our efforts to use mRNA display to screen for covalent binding inhibitors of Staphylococcus aureus serine hydrolases. pubs.acs.org/articlesonre...

27.02.2025 16:54 β€” πŸ‘ 19    πŸ” 4    πŸ’¬ 3    πŸ“Œ 0

A great read for these dire times

09.02.2025 04:15 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

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