Johannes Rainer

still possible to apply 👇

The Tidyomics Ecosystem – tidyomicsBlog An introduction to the tidyomics ecosystem, including principles, core packages, publications, and community resources for tidy omic analysis.

It's official! The #tidyomics blog is up! 🚀

Here, the introductory post
tidyomics.github.io/tidyomicsBlo...

This blog aims to publish not only news about our community but also anything related to tidy interfaces, opinions, events, and more.

Plz share! 🙏
@bioconductor.bsky.social #rstats

and of course also big thanks to @metabomichael.bsky.social and @human-dn.bsky.social ☺️

Great work from @philouail.bsky.social 🙌

#xcms now fully integrated into @bioconductor.bsky.social 💪

👉 #metabolomics #MassSpectrometry #rstats

thanks Ryo!

Molecular characterization of liver steatosis through circulating proteins, metabolites and lipids Background: Metabolic dysfunction-associated steatotic liver disease (MASLD) is among the most prevalent liver disorders in Western countries. While steatosis is prevalent, molecular mechanisms associ...

was a bit too fast - DOI not yet available. preprint link in @medrxivpreprint.bsky.social is www.medrxiv.org/content/10.6...

New preprint 📃: doi.org/10.64898/202...

👉 characterization of liver steatosis through blood #metabolomics and #proteomics

Great work from Marilyn! and big thanks to all co-authors 🙌

Join EMBL's Interdisciplinary Postdoc Programme!
3 years funding, self-designed interdisciplinary project co-led between EMBL PI and PI in one of EMBL's actual, prospect or associate member states.

In particular: AI&Theory, use mathem. models, physics principles and AI

www.embl.org/about/info/p...

Representing EuroBioC2026 at the @abacbs.bsky.social Conference this week.

The next European @bioconductor.bsky.social Conference will be in Turku, Finland!

#ABACBS2025
#EuroBioC2026

🚀 EuroBioC2026 – Call for Abstracts is Now Open!

We invite submissions for short talks, posters, and workshops for EuroBioC2026 by Jan 30, 2026.

👉 Submit here: openreview.net/group?id=bio...

⚠️ Note: Register on OpenReview at least two weeks before the abstract deadline to be able to submit.

The Euro Bioc 2026 in Turku is official!

Researcher in Software Development for Large-Scale Mass Spectrometry Data Analysis (MetaRbolomics4Galaxy) Eurac Research · Bozen/Bolzano

📣 join in my team 🤗!

👇
- #rstats software development
- contribute to @bioconductor.bsky.social and @galaxyproject.bsky.social
- large-scale #MassSpectrometry #metabolomics and #proteomics data analysis
- hiking ⛰️

📍 Bolzano, 🇮🇹
⏲️ 3 year position

🔗 full description: bit.ly/4pyXi3V

please share

yey! also spotted hackathon co-lead @philouail.bsky.social - I was only virtually attending 😔 - and very likely missed a lot of fun

Happy to announce that also our #SpectriPy package for cross-language #Rstats - #Python #MassSpectrometry data analysis is part of the just released @bioconductor.bsky.social release 3.22 🥳

This was a great collaborative effort! Thanks to all contributors! 💪

Bioconductor - Bioconductor 3.22 Released The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and…

🚀 Bioconductor 3.22 is released!

Thanks to all developers and community members for contributing to the project!

🔗 Please see the full release announcement here: bioconductor.org/news/bioc_3_...

🧬 EuroBioC2026 is coming to Turku, Finland, from June 3–5, 2026!

Expect 3 exciting days with the Bioconductor community, showcasing the latest advances in Bioconductor software and emerging technologies shaping computational biology.

👉 More details soon at eurobioc2026.bioconductor.org

🔬 New in #MassSpectrometry and @jorainer.bsky.social's team! SpectriPy bridges R & Python for data analysis.

Breaking language barriers → more flexible & reproducible science. 🚀

🔗bit.ly/48L9yJa

#RStats #Python #Bioinformatics #OpenSource

My take: Engineering *is* important. Ideas are cheap. Novelty is overrated. "Hyperparameter tuning" is a cynically dismissive term for something that is in fact the real, difficult problem.

GPU Support in Bioconductor – Bioconductor community blog Support GPU-accelerated Bioconductor packages

🚀 New on the Bioconductor Blog: GPU Support in Bioconductor

Bioconductor is building better support for GPU-accelerated package development for faster and more scalable analysis workflows
Learn how package maintainers can leverage this new GPU infrastructure: blog.bioconductor.org/posts/2025-1...

New #HUMAN paper out! 🩸

Our partners from CEMBIO explored blood microsampling (DBS, qDBS, VAMS) for untargeted #lipidomics using high-throughput LC-MS.

Volumetric devices show plasma-like precision & recovery!

🔗bit.ly/476qWXw

New #matchms release (0.31)🚀

With functionalities that were on our TODO list for a looooong time: Flash Entropy and BLINK scores! The new "FlashSimilarity" allows computing modified cosine, spectral entropy etc., about 100x faster (or more if you use Linux).

#Python #opensource #massspec

Reminder 👇

Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy?

⏲️ 3 year position
📍 Bolzano, 🇮🇹

👉 apply if you like:

- #rstats SW development
- @bioconductor.bsky.social
- large-scale #metabolomics data analysis
- hiking ⛰️

🔗 bit.ly/46AMawx

Group picture with all participants at EuroBioC2025

Vince Carey, Bioconductor project lead, giving the opening keynote lecture.

Audience carefully listening to Vince Carey in the Auditorium.

Christophe Vanderaa giving a workshop on msqrob2, a robust modelling workflow for mass spectrometry-based proteomics

#EuroBioC2025 is over and it has been a blast! Thanks to all participants that came to @prbb.org for contributing to make such an enjoyable event and special thanks to the support from our sponsors, the organizing institutions @upf.edu @isglobal.org and the European @bioconductor.bsky.social Society

Thanks Robert and the rest for the organizing committee for this great, and really well organized, conference!

EuroBioC2025 group photo on PRBB terrace with sea in background.

EuroBioC2025 welcome in PRBB auditorium by host Robert Castelo, showing slides with conference sticker and sponsor logos.

EuroBioC2025 hexwall banner with the hexwall creator Kevin Rue-Albrecht standing beside it.

EuroBioC2025 carved wooden keyring, a gift for all participants, created by Annekathrin Nedwed.

EuroBioC2025 is in full swing here in Barcelona!

Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow!

#EuroBioC2025 #Bioconductor #OpenScience #Community

and a preprint with some more info on the #Spectra infrastructure and #SpectriPy : doi.org/10.31219/osf...

Was really fun to present our #SpectriPy @bioconductor.bsky.social package for combined #rstats & #Python analysis of #MassSpectrometry data today at #EuroBioC2025

also available on Zenodo: doi.org/10.5281/zeno...

thanks Wolfgang 😊

Dream job - research software engineer, in one of the most beautiful parts of the world

@philouail.bsky.social presenting the #Metabonaut tutorials for #metabolomics data analysis at #EuroBioC2025 @bioconductor.bsky.social conference.

@human-dn.bsky.social #MassSpectrometry #ProudPI