Johannes Rainer

Bioconductor nominations graphic with CAB and TAB illustrations and www.bioconductor.org

🌟 Bioconductor 2025 CAB & TAB nominations are open!

Join our advisory boards to support community growth or guide technical strategy.

📅 Apply by Aug 31
CAB: forms.gle/8NYxRGhprfuN...
TAB: forms.gle/eqef9ThpUypc...

#Bioconductor #RStats

Post-Doc Researcher for the evaluation of external influences on blood proteomics and metabolomics data Eurac Research · Bozen/Bolzano

Interested in a #PostDoc / researcher position in my team at Eurac Research 🇮🇹?

👉 apply if you like

- analyzing large-scale #proteomics and #metabolomics data
- #rstats and/or #Python
- reproducible research
- hiking ⛰️ (on weekends!)

🔗 eurac.onboard.org/jobs/Q4301nGV

Have added the slides to Zenodo: doi.org/10.5281/zeno...

Added: doi.org/10.5281/zeno... 😊

Combining #rstats and #Python for #MassSpectrometry data analysis is the way to go!

github.com/rformassspec...

supports (for now) #matchms and #spectrum_utils #Python libraries

Speaker at podium holding book in one hand and loose pages in another

Tuomas Borman from @antagomir.bsky.social lab demonstrating why data containers are so useful (book >> loose pages)

Online book for microbiome analysis:
microbiome.github.io/OMA/docs/dev...

#GBCC2025

I did not plan to - but will 😊. I'll post the link here once done

@jorainer.bsky.social and @philouail.bsky.social gave a great overview of the ecosystem around #RforMassSpectrometry and #XCMS!

#MetSoc25
I am super glad they now also provide options to combine with #Python and #matchms (thanks🙏)

and BIG thanks to all contributors over the years! just tagging the ones I found here on bsky @sneumann.bsky.social @carlbrunius.bsky.social @janstanstrup.bsky.social

with a beautiful visual explanation of it's modularity 😁

Philippine @philouail.bsky.social presenting #xcms , summary of 20 years development and recent extensions at the #MetSoc2025 conference!

#ProudPI 😎 #rstats @bioconductor.bsky.social #metabolomics #MassSpectrometry

As mentioned in my talk yesterday at #MetSoc2025,@schymane@mstdn.social and myself offered a bottle of wine to the winners of #CASMI 2016 contest.
Pleased to confirm eventual delivery of a fine Czech Merlot to www.linkedin.com/in/tobias-ki... for winningCategory 3: Full Information.

Hi, in case your phone didn't pick up the QR code to the slides of my Hitch-Hikers Guide to Computational Metabolomics talk this morning at #Metabolomics2025, featuring #xcms, #massbank, not #metfrag but #CASMI and #MetFamily, please find them at doi.org/10.5281/zeno...

Steffen @sneumann.bsky.social on the history and background of @bioconductor.bsky.social during his keynote talk at the #MetSoc2025 conference 😎

📢 @philouail.bsky.social and I will present the #Metabonaut resource of #metabolomics data analysis tutorials at #MetSoc2025

where: BioinfoHub
when: 15:00

will be loud during coffee break - so apologies if you can't hear 😔

#MassSpec #rstats @bioconductor.bsky.social

also, the package was added yesterday to the @bioconductor.bsky.social developmental branch 💪

📢 Poster 1001 at #MetSoc2025: Marilyn De Graeve on our #SpectriPy #rstats package to integrate #python and #rstats packages for #MassSpec data analysis . TODAY

Bioconductor Training partners with Physalia Courses – Bioconductor community blog A new collaboration to expand access to bioinformatics training through co-branded courses, instructor support, and inclusive access.

🧬 New from the Bioconductor Training Committee:

We’re teaming up with @physaliacourses.bsky.social‬ for co-branded training in bioinformatics and computational biology.

Details here 👉 blog.bioconductor.org/posts/2025-0...

Cohort Profile: the Cooperative Health Research in South Tyrol study Italy’s autonomous South Tyrol province is uniquely adapted to longitudinal population studies of health and healthy aging with its alpine setting, self-go

🆕 The Cohort Profile paper of the Cooperative Health Research In South Tyrol is out on @intjepidemiol.bsky.social 🧵

academic.oup.com/ije/article/...

*Czech* out the presentations by our PIs and DCs during Metabolomics 2025! 😉

Chat with us about all things blood 👀 (or data) over coffee, beer or on the Charles Bridge 🍻

See you all in Prague ❣️

#MetSoc25
#metabolomics

🚀 New in Metabonaut: tested xcms on a 4,000+ sample LC-MS dataset — all on a laptop! 💻
Fully reproducible + now possible thanks to dev improvements in xcms.
Vignette: rformassspectrometry.github.io/Metabonaut/a...

Big thanks to @jorainer.bsky.social

#RStats #MassSpec #OpenScience #Metabonaut

Bioconductor moving to Zulip for community chat

stat.ethz.ch/pipermail/bi...

Munich Metabolomics Meeting Save the Date! The Munich Metabolomics Meeting 2025 is coming up! Dates: 9-10.10.2025 Venue: TUM School of Life Sciences - Freising

#ASMS2025 is around the corner, #MetSoc2025 is coming up soon... And if you don't have enough or you might missing out on these two, please consider this year's Munich Metabolomics Meeting. Registration is now open. We have @pluskal-lab.org as wonderful keynote speaker www.munichmetabolomics.com

Post-Doc Researcher in Multi-omics Data Analysis Eurac Research · Bozen/Bolzano

📢 Job opportunity: a post-doc position in multiomics data analysis is available in the group of my outstanding colleague Christian Fuchsberger, to whom enquiries should be sent www.eurac.edu/en/people/ch...

eurac.onboard.org/jobs/Qmw91BG9

Bioconductor in Africa: Highlights from Our First In-Person Course – Bioconductor community blog A blog for the Bioconductor community!

📝 New Bioconductor blog post!

We’ve just published a recap of our first in-person course in Africa, held in Nairobi this March 🇰🇪
Read about the highlights, feedback, and what’s next:
👉 blog.bioconductor.org/posts/2025-0...

#Bioinformatics #BioconductorAfrica #OpenScience #RStats #CapacityBuilding

LC-MS/MS Data Annotation using R and Python

to see #SpectriPy in action: check the workflow in @philouail.bsky.social 's #Metabonaut resource 🚀 rformassspectrometry.github.io/Metabonaut/a...

next on the list: submission 👉 to @bioconductor.bsky.social 💪

SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python De Graeve et al., (2025). SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python. Journal of Open Source Software, 10(109), 8070, https://doi.org/10.21105/joss.08070

Happy to share that our article on SpectriPy is now online: joss.theoj.org/papers/10.21... Combining best of both worlds, #RStats and #Python! #metabolomics #lipidomics Thanks to @jorainer.bsky.social for leading this and thanks to all co-authors!

Just published in JOSS: 'SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python' https://doi.org/10.21105/joss.08070

SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python De Graeve et al., (2025). SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python. Journal of Open Source Software, 10(109), 8070, https://doi.org/10.21105/joss.08070

Thrilled to share that our paper "SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python" was published in @joss-openjournals.bsky.social 🥳

This was a great community effort! Big 🙌 to all contributors!

#MassSpectrometry + #rstats + #Python 👉 doi.org/10.21105/jos...