Johannes Rainer

Universität Basel: Bioinformatician (100%) The Department of Biomedicine (DBM) is a joint effort between the University of Basel and the University Hospitals Basel. It unites basic and clinical scientists to advance our understanding of health...

We have a 3-years position open in our facility. Come join us to do great science in a nice team!
jobs.unibas.ch/offene-stell...

Poster announcing Aura Raulo as a keynote speaker for EuroBioC 2026. The graphic features the Bioconductor logo and a headshot of Aura Raulo inside a teal circular frame. She is identified as Browne Junior Research Fellow in Biology at the University of Oxford. The description highlights her research on probabilistic and statistical models of complex spreading processes in social contact networks, focusing on microbiome transmission and microbial diversity in animal networks. Event details: June 3–5, 2026, BioCity Turku, Finland, with the website eurobioc2026.bioconductor.org. Logos for The Finnish Society for Bioinformatics, University of Turku, and CompuLifeSci appear at the bottom.

🎉 Speaker Reveal – EuroBioC 2026

We’re excited to announce Dr Aura Raulo as a keynote speaker at EuroBioC2026!

🚨Have work to share? Abstract submission is open!
Submit here: openreview.net/group?id=bio...

Learn more about EuroBioC2026 here: eurobioc2026.bioconductor.org

#EuroBioC2026

Registration is now open!

See: csama2026.bioconductor.eu/registration...

Banner for the Bioconductor Developers’ Forum announcing its return. The text reads: “Developers’ Forum is back! The Developers’ Forum aims to provide a regular platform for developers and users to discuss software and hardware infrastructure and future developments in the Bioconductor project. Last Thursday of every month, 4pm GMT. First presentation: Feb 26, 2026 — Native GPU compute access in R: Metal, OpenCL, CUDA, and heterogeneous compute hardware frameworks — Nicholas Cooley.” The graphic shows illustrated people collaborating around a large smartphone.

🔔 The Bioconductor Developers’ Forum is back!

This monthly forum is for developers & users to discuss infrastructure, future tools, and community-driven changes.

🗓 When: Last Thursday of every month
⏰ Time: 4pm GMT

First session: Feb 26, 2026
More info: bioconductor.org/developers/d...

Registration now open for CSAMA!
📜 csama2026.bioconductor.eu

Highly recommend for learning data science with a scenery, plus a fantastic crowd of students and faculty alike!

📸 from the traditional mid-week hike during last year’s edition.

let's get the community rolling 💪! Thanks to Vilhelm Suksi from @antagomir.bsky.social 's group for the contribution of the notame vignette 🙌

Exploring and Analyzing LC-MS Data This resource hosts tutorials and end-to-end workflows describing how to analyze LC-MS/MS data, from raw files to annotation, using Bioconductor packages.

🚀 New release: Metabonaut v1.4.0 is here!

1️⃣ New integration with the notame package for robust feature selection. 2️⃣ Added GNPS2 FBMN export for molecular networking.

Explore the updates: rformassspectrometry.github.io/Metabonaut/

#Metabolomics #RStats #OpenScience #MassSpec #Bioconductor

Little over a month left to submit an abstract to #EuroBioC2026 (eurobioc2026.bioconductor.org/pages/submis...), which will be held in Turku, Finland.

Here are a couple of Finnish Christmas traditions that you might not know:

CSAMA 2026 Biological Data Science – CSAMA 2026 Biological Data Science 22nd Edition Bressanone-Brixen, Italy 24-29 May 2026

This year's CSAMA Biological Data Science Summer School in Brixen takes place 24-29 May 2026.

Topics: single-cell and spatial omics, statistics, multi-omics, ML/AI, all very hands-on using R / Bioconductor!

More info: csama2026.bioconductor.eu

Registration: 1 Feb 2026!

@bioconductor.bsky.social

and there will also be lectures and workshops for #MassSpectrometry - based #proteomics and #metabolomics analysis in #rstats with @bioconductor.bsky.social 😎

Screenshot of the course website

CSAMA 2026 - Biological Data Science Summer School
Bressanone-Brixen, South Tyrol / Italy
24-29 May 2026
csama2026.bioconductor.eu

Statistical & computational methods for single cell and spatial omics, with lectures and hands-on exercises in R/Bioconductor.

aaaah, it's Matthijs Vynck (with a y not i as in the original post) - sorry for that 🫣🙏

my workshop is available here: jorainer.github.io/xcms4gnps2/ - with contribution from @philouail.bsky.social

was a great #computational #metabolomics seminar yesterday in Ghent with @jjjvanderhooft.bsky.social Matthijs Vinck and myself! thanks @lynnvanhaecke.bsky.social for inviting us 🙏

Thanks Gary! Also, we have to thank you for keeping #xcms open-source and for adding it to @bioconductor.bsky.social back in 2006 🙌

still possible to apply 👇

The Tidyomics Ecosystem – tidyomicsBlog An introduction to the tidyomics ecosystem, including principles, core packages, publications, and community resources for tidy omic analysis.

It's official! The #tidyomics blog is up! 🚀

Here, the introductory post
tidyomics.github.io/tidyomicsBlo...

This blog aims to publish not only news about our community but also anything related to tidy interfaces, opinions, events, and more.

Plz share! 🙏
@bioconductor.bsky.social #rstats

and of course also big thanks to @metabomichael.bsky.social and @human-dn.bsky.social ☺️

Great work from @philouail.bsky.social 🙌

#xcms now fully integrated into @bioconductor.bsky.social 💪

👉 #metabolomics #MassSpectrometry #rstats

thanks Ryo!

Molecular characterization of liver steatosis through circulating proteins, metabolites and lipids Background: Metabolic dysfunction-associated steatotic liver disease (MASLD) is among the most prevalent liver disorders in Western countries. While steatosis is prevalent, molecular mechanisms associ...

was a bit too fast - DOI not yet available. preprint link in @medrxivpreprint.bsky.social is www.medrxiv.org/content/10.6...

New preprint 📃: doi.org/10.64898/202...

👉 characterization of liver steatosis through blood #metabolomics and #proteomics

Great work from Marilyn! and big thanks to all co-authors 🙌

Join EMBL's Interdisciplinary Postdoc Programme!
3 years funding, self-designed interdisciplinary project co-led between EMBL PI and PI in one of EMBL's actual, prospect or associate member states.

In particular: AI&Theory, use mathem. models, physics principles and AI

www.embl.org/about/info/p...

Representing EuroBioC2026 at the @abacbs.bsky.social Conference this week.

The next European @bioconductor.bsky.social Conference will be in Turku, Finland!

#ABACBS2025
#EuroBioC2026

🚀 EuroBioC2026 – Call for Abstracts is Now Open!

We invite submissions for short talks, posters, and workshops for EuroBioC2026 by Jan 30, 2026.

👉 Submit here: openreview.net/group?id=bio...

⚠️ Note: Register on OpenReview at least two weeks before the abstract deadline to be able to submit.

The Euro Bioc 2026 in Turku is official!

Researcher in Software Development for Large-Scale Mass Spectrometry Data Analysis (MetaRbolomics4Galaxy) Eurac Research · Bozen/Bolzano

📣 join in my team 🤗!

👇
- #rstats software development
- contribute to @bioconductor.bsky.social and @galaxyproject.bsky.social
- large-scale #MassSpectrometry #metabolomics and #proteomics data analysis
- hiking ⛰️

📍 Bolzano, 🇮🇹
⏲️ 3 year position

🔗 full description: bit.ly/4pyXi3V

please share

yey! also spotted hackathon co-lead @philouail.bsky.social - I was only virtually attending 😔 - and very likely missed a lot of fun

Happy to announce that also our #SpectriPy package for cross-language #Rstats - #Python #MassSpectrometry data analysis is part of the just released @bioconductor.bsky.social release 3.22 🥳

This was a great collaborative effort! Thanks to all contributors! 💪

Bioconductor - Bioconductor 3.22 Released The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and…

🚀 Bioconductor 3.22 is released!

Thanks to all developers and community members for contributing to the project!

🔗 Please see the full release announcement here: bioconductor.org/news/bioc_3_...