bioRxiv Microbiology

Microbial Diversity and Ecological Structure of the Gut Microbiota in Children and Adults from an Indigenous Mexican Community https://www.biorxiv.org/content/10.1101/2025.08.03.668344v1

Functional auxin signaling and phosphorus acquisition triggered in planta by the extremophile bacterium Pseudomonas extremaustralis https://www.biorxiv.org/content/10.1101/2025.08.03.668350v1

From prototype to outbreak: conserved pathogenesis of Oropouche virus in a novel murine pregnancy model highlights its public health implications https://www.biorxiv.org/content/10.1101/2025.08.02.668287v1

Marine cold seep ANME-2/SRB consortia produce their lipid biomass from inorganic carbon https://www.biorxiv.org/content/10.1101/2025.08.02.667857v1

Early-Life Poultry-Derived Lactobacilli Drive Microbial Succession and Gut Immune Modulation in Broiler Chickens https://www.biorxiv.org/content/10.1101/2025.08.01.668251v1

The CspC:CspA heterodimer transduces germinant and co-germinant signals during Clostridioides difficile spore germination. https://www.biorxiv.org/content/10.1101/2025.08.01.668244v1

Promoter evolution in HIV-1C establishes latent reservoirs highly resistant to reversal https://www.biorxiv.org/content/10.1101/2025.08.02.668273v1

An optimized model for HEV infection in the HepaRG cell line https://www.biorxiv.org/content/10.1101/2025.08.01.667596v1

Antimalarial Potential of Synthetic Geraniol and Nerol Analogs https://www.biorxiv.org/content/10.1101/2025.08.01.664114v1

Recovery of microbial ecophysiology and carbon accrual functions in peatlands under restoration https://www.biorxiv.org/content/10.1101/2025.08.01.668219v1

Respiratory syncytial virus load-dependent ciliated cell dedifferentiation and downregulation of immune response genes https://www.biorxiv.org/content/10.1101/2025.08.01.666372v1

A single transcriptional regulator is crucial for the adaptation of Staphylococcus aureus to diverse niches https://www.biorxiv.org/content/10.1101/2025.08.01.668060v1

Multicellular group formation as a resource competition strategy for marine bacteria https://www.biorxiv.org/content/10.1101/2025.08.01.668187v1

Connections between Klebsiella pneumoniae Bloodstream Dynamics and Serotype-Independent Capsule Properties https://www.biorxiv.org/content/10.1101/2025.08.01.668200v1

SimUrine: A Novel, Fully Defined Artificial Urinary Media for Enhanced Microbiological Research of Urinary Bacteria https://www.biorxiv.org/content/10.1101/2025.08.01.668053v1

Consequences of benzalkonium chloride tolerance for selection dynamics and de novo resistance evolution driven by antibiotics https://www.biorxiv.org/content/10.1101/2025.08.01.667674v1

Polymyxin heteroresistance in Klebsiella oxytoca https://www.biorxiv.org/content/10.1101/2025.08.01.668101v1

Cleavage of Streptococcus pneumoniae ribosomal protein L27 by the Prp protease https://www.biorxiv.org/content/10.1101/2025.08.01.668195v1

PE11 promotes intracellular persistence of Mycobacterium tuberculosis by inhibiting autophagy and lysosomal biogenesis by targeting the FLCN-lactate-TFEB signaling axis https://www.biorxiv.org/content/10.1101/2025.07.31.668032v1

Identification of Novel Cryptic and Classical Clades in Clostridioides difficile https://www.biorxiv.org/content/10.1101/2025.08.01.668003v1

The gut microbiota-derived metabolite indole regulates cytoskeletal functions and virulence in Entamoeba histolytica https://www.biorxiv.org/content/10.1101/2025.08.01.668081v1

Surveillance on California dairy farms reveals multiple sources of H5N1 transmission https://www.biorxiv.org/content/10.1101/2025.07.31.666798v1

Integrative Analysis of the Mouse Cecal Microbiome Across Diet, Age, and Metabolic State in the Diverse BXD Population https://www.biorxiv.org/content/10.1101/2025.07.31.667922v1

Food Microbiome Metabolic Modules (F3M), a tool suite for functional profiling of food microbiomes https://www.biorxiv.org/content/10.1101/2025.07.31.667869v1

Antifungal exposure can enhance Candida glabrata pathogenesis https://www.biorxiv.org/content/10.1101/2025.07.31.667834v1

Metagenomics and qPCR analysis of aerobic metabolic TCE degrading bacteria https://www.biorxiv.org/content/10.1101/2025.07.31.667672v1

Identification of the negamycin split biosynthetic gene cluster in Kitasatospora purpeofusca ATCC21470 https://www.biorxiv.org/content/10.1101/2025.07.31.667836v1

Multi-omic dereplication of antibiotic production by diffusion chamber isolated bacteria from Australian soils https://www.biorxiv.org/content/10.1101/2025.07.30.667785v1

Streptococcal natural products mediate interspecies competition with Gram-positive bacterial pathogens https://www.biorxiv.org/content/10.1101/2025.07.31.667707v1

Kinetic Plasticity of Nitrite-Oxidizing Bacteria Containing Cytoplasmic Nitrite Oxidoreductase https://www.biorxiv.org/content/10.1101/2025.07.31.663499v1