Flávia E. Rius

English version now available
luisdva.github.io/rstats/RRstu...

Using quarto with python is a whole new experience. It is *not* a simple switch of languages (if you're an R user like me).

I use Google Slides. It is much easier to organize the disposition of figures and text boxes than by using quarto. In quarto, I would need to google (or ask an LLM) how to move a figure, or adjust the layout by writing everything. Dragging and droping, and seeing it right away is simpler.

We also have a separate programme for the Global South. If your idea is selected, we will bring the event to your region.

#BiologistsWorkshops

Details: www.biologists.com/workshops/pr...

Wow.
✨

😂

Thanks for the explanation! Very interesting, indeed. Will check it out in my next trip to the US!

Is there any buzzfeed-like quiz out there yet to figure out which AI model is the best for you?
It would be fun.

How come, a mushroom coffee? Does it taste more like coffee or more like mushrooms?

I am a coffee lover, wouldn't trade it for anything, but I am very curious about this exquisite drink you posted about!

{ellmer} 10/10 in stability to extract structured from unstructured data using #gemini API.

I used type_object() to set the desired output, and json to set the input. I'm still experimenting with LLM API calls, but so far it was much better error-wise than a python script with schemas.

#rstats

Guys, you need to come up with a better strategy of getting rid of robots. I lose half of my day recognizing buses, bikes and stairs.

Creating a package to organize my work, instead of just reloading functions from scripts, was the best thing I did so far this year.

#rstats

2 weeks left to take the stage at posit::conf(2026)! 🎤
Share your work on R, Python, open-source, or any topic the community would love. Can't make it to Houston? Apply for our virtual track! It’s a great way to reach the global community.
Apply here: posit.co/blog/posit-c...
#positconf2026 #rstats

Spotlight on the Shingles Vaccine—Again! Two new studies add to a remarkable body of evidence for benefit

The Shingles vaccine and reduction of dementia: a new natural experiment from Canada replicated 3 others and adds to this week's link to slowing of biological aging.
erictopol.substack.com/p/spotlight-...

If you'd like your files to be ordered by "last modified" in the explorer, you can append the following config to your settings.json:

{
"explorer.sortOrder": "modified"
}

Works both in #positron and in #vscode.

If you are using independent training and testing sets which need PCA calculation in genomics, be sure to do it using projection and to the same panel, alongside the same parameters (maf, ld and missingness). Otherwise, you are comparing bananas to apples.

#genomics #bioinformatics

Speak at posit::conf(2026) and share your R & Python stories!

Accepted speakers get:
✨ Travel & lodging help
✨ Free conference pass
✨ Professional coaching

Apply by Feb 6 to join us Sept 14-16 in Houston, TX!

Submit here: pos.it/conf-talk-2026

#positconf2026 #rstats #pydata

3 things I learned from @stephenturner.us workshop on #R pkg development in #Positron

- there is a light bulb icon that creates a roxygen template for an R file

- available::available("pkgname") checks if the name you want has already been used

- {pkgndep} evaluates heaviness of pkg dependencies

Install samtools, bcftools and htslib on linux Install samtools, bcftools and htslib on linux. GitHub Gist: instantly share code, notes, and snippets.

I use a gist everytime I need to run a few basic #bioinformatics explorations in a new instance, and thought I could share it here so someone could benefit from it too!

I have forked it and adapted a bit to my needs. Here it goes:
gist.github.com/flaviaerius/...

I won't miss this one!

poisonfrogs: Color Palettes Inspired by Neotropical Poison Frogs laurenoconnelllab.github.io/poisonfrogs/ #Rstats

Really nice work by @nbaya.bsky.social and co. showing that, as expected, individuals whose observed phenotype deviates from their genetically predicted trait are enriched for rare damaging variants in associated genes with said trait.

Now to see if embryo selection companies pick up on this 😉

Crazy interesting biology!
I wonder if there is any phenotypic evidence of this chimerism.

GitHub - eriksquires/RStudio_with_Windows Contribute to eriksquires/RStudio_with_Windows development by creating an account on GitHub.

#RStats Friends, for those of you who need to work with #RStudio in Windows I've put a survival guide for you here.

github.com/eriksquires/...

Turn YAML into R and R into YAML with the new {yaml12} #RStats 📦
posit-dev.github.io/r-yaml12/ind...
By @t-kalinowski.bsky.social

On the 📦 website: "YAML in 2 Minutes: A Gentle Introduction for R Users"
posit-dev.github.io/r-yaml12/art...

polars-bio—fast, scalable and out-of-core operations on large genomic interval datasets academic.oup.com/bioinformati... 🧬🖥️🧪 github.com/biodatageeks...

Tech I'm thankful for (2024) Data science and bioinformatics tech I'm thankful for in 2024: tidyverse, RStudio, Positron, Bluesky, blogs, Quarto, bioRxiv, LLMs for code, Ollama, Seqera Containers, StackOverflow, ...

Tech I'm thankful for blog.stephenturner.us/p/tech-im-th... #rstats 🧬🖥️🧪

Tip for formatting text on Google Docs by Gemini *without changing content*:

If the text is in one language, use the prompt to format in another language. It worked perfectly for me!

Before that, every time I asked it to "format without changing text" it failed.

#gemini

YouTube video by Posit PBC Precision Medicine for All: Using Tidymodels to Validate PRS in Brazil (Flávia Rius) | posit::conf

My talk on #positconf2025 is available on Youtube!

Check it out: youtu.be/phh8p2ImBMQ?...

Thanks a lot!!! Will have a look at them.