Rommie Amaro's Avatar

Rommie Amaro

@rommieamaro.bsky.social

Professor at UC San Diego. Computational biophysics, biology, chemistry. Multiscale modeler. Viruses. Cancer. Co-Director of the Airborne Institute.

4,490 Followers  |  632 Following  |  329 Posts  |  Joined: 19.09.2023  |  2.4103

Latest posts by rommieamaro.bsky.social on Bluesky

Happy to share the latest from the lab, led by Daniel Alvarez, in collaboration with @lizconibear.bsky.social‬. In this AA-MD tour-de-force, we delve deep into the mechanism and energetics of lipid uptake by bridge-like lipid transfer proteins, and we learn a few interesting things along the way...

07.08.2025 08:45 β€” πŸ‘ 42    πŸ” 14    πŸ’¬ 1    πŸ“Œ 0
Preview
Trump Administration Scraps Effort to Pause Health-Research Funding The administration halted and then restarted billions in new research grants flowing from the National Institutes of Health.

UPDATE: The pause was scrapped Tuesday evening after intervention by top White House officials. www.wsj.com/politics/pol...

30.07.2025 03:38 β€” πŸ‘ 495    πŸ” 154    πŸ’¬ 6    πŸ“Œ 41

Given that OMB is part of the Executive Office of the President, this should read

"after intervention by OTHER top White House Officials."

30.07.2025 11:36 β€” πŸ‘ 115    πŸ” 36    πŸ’¬ 12    πŸ“Œ 1
Post image

2/n

30.07.2025 02:06 β€” πŸ‘ 14    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
Post image

/fin

30.07.2025 02:06 β€” πŸ‘ 15    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
Preview
Trump Administration Puts New Chokehold on Billions in Health-Research Funding The National Institutes of Health can’t award grants to outside researchers under a new White House restriction.

WSJ story about OMB blocking NIH spending and grant making

www.wsj.com/politics/pol...

1/n

30.07.2025 02:06 β€” πŸ‘ 71    πŸ” 38    πŸ’¬ 5    πŸ“Œ 4
BPS2026 Travel Awards | Biophysical Society

Did you know about the BPS Bridging Funds Program?

If you're a biophysicist navigating a difficult time, this program is for you to defray costs for attending the BPS Annual Meeting!
I am grateful to the @biophysicalsoc.bsky.social for supporting our members!
www.biophysics.org/2026meeting/...

25.07.2025 15:19 β€” πŸ‘ 8    πŸ” 9    πŸ’¬ 0    πŸ“Œ 1
Preview
14 Republican senators urge White House to release delayed NIH funds Sen. Katie Britt (R-Ala.) is leading the letter making the ask of OMB director Russ Vought.

β€œWithholding or suspending these funds would jeopardize that trust and hinder progress on critical health challenges facing our nation. Ultimately, this is about finding cures and seeing them through to fruition.”

www.politico.com/news/2025/07...

25.07.2025 18:30 β€” πŸ‘ 39    πŸ” 17    πŸ’¬ 0    πŸ“Œ 2
Preview
AlphaFold developer Google DeepMind to fund CASP as NIH funding falls short Protein structure prediction contest CASP gets temporary funding from Google DeepMind as NIH grant runs out.

NEW from me at STAT:

We've learned that DeepMind is going to fund CASP, the protein structure competition that brought Google DeepMind's #AlphaFold to prominence (and a Nobel Prize), as its NIH funding runs out.

More @statnews.com:
www.statnews.com/2025/07/21/c...

πŸ–₯️🩺πŸ§ͺ🧬 #bioML

21.07.2025 16:40 β€” πŸ‘ 101    πŸ” 34    πŸ’¬ 0    πŸ“Œ 7
Video thumbnail

BREAKING: Scientists are staging a β€œscience fair” in the lobby of a Congressional building to tell elected officials about the critical knowledge the US will lose because their research grants have been canceled.

08.07.2025 15:31 β€” πŸ‘ 40529    πŸ” 11351    πŸ’¬ 1091    πŸ“Œ 861
Preview
World’s premier cancer institute faces crippling cuts and chaos | CNN The Trump administration’s broadsides against scientific research have caused unprecedented upheaval at the National Cancer Institute, the storied federal government research hub that has spearheaded ...

New hair-raising piece from CNN about the National Cancer Institute...

www.cnn.com/2025/07/08/h...

08.07.2025 14:50 β€” πŸ‘ 85    πŸ” 49    πŸ’¬ 0    πŸ“Œ 9
Preview
the word alert is in a purple circle ALT: the word alert is in a purple circle

ACTION ITEM-----ACTION ITEM

Implementation of Schedule F

This is what a lot of us have been worried about.

This allows for many civil service positions to replaced with political appointees. This could include NIH institute directors and even POs.

BUT THERE IS A COMMENT PERIOD...

1/n

23.04.2025 18:03 β€” πŸ‘ 364    πŸ” 449    πŸ’¬ 18    πŸ“Œ 59

🚨. I've been mostly off social media for a bit (mental health) but this is very important!!!!!

Please comment and circulate to everyone you know for comments!!!

23.04.2025 18:26 β€” πŸ‘ 9    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
Post image Post image

Reminiscing about our Airborne Institute event last week. Having @carlzimmer.com attend & sign his book Air-borne made the day beyond extra special at UC San Diego. We are ready to take on airborne disease and push beyond the place the world has been stuck for 200+ years! @rommieamaro.bsky.social

21.04.2025 19:41 β€” πŸ‘ 33    πŸ” 8    πŸ’¬ 1    πŸ“Œ 0
Preview
Trump administration freezes $1B for Cornell, $790M for Northwestern Cornell is the sixth Ivy League institution to face a federal funding freeze.

Trump administration freezes $1B for Cornell, $790M for Northwestern.

09.04.2025 16:38 β€” πŸ‘ 64    πŸ” 32    πŸ’¬ 17    πŸ“Œ 8
Infographic on the chemistry of beer. The top of the graphic identifies the major stages of beer brewing: milling, mashing, brewing, cooling, fermenting, and maturing. The rest of the graphic identifies four key components of beer flavour: alpha acids, beta acids, essential oils and esters. Alpha acids degrade during brewing and form iso-alpha acids, which contribute bitterness. Humulone is the main alpha acid in the majority of hops. Beta acids also originate from hops and add a harsher bitterness than alpha acids. Essential oils contribute the majority of hop flavour and aroma, and there are over 250 found in hops. Esters form during the reaction of alcohol with organic acids, and give fruity flavours.

Infographic on the chemistry of beer. The top of the graphic identifies the major stages of beer brewing: milling, mashing, brewing, cooling, fermenting, and maturing. The rest of the graphic identifies four key components of beer flavour: alpha acids, beta acids, essential oils and esters. Alpha acids degrade during brewing and form iso-alpha acids, which contribute bitterness. Humulone is the main alpha acid in the majority of hops. Beta acids also originate from hops and add a harsher bitterness than alpha acids. Essential oils contribute the majority of hop flavour and aroma, and there are over 250 found in hops. Esters form during the reaction of alcohol with organic acids, and give fruity flavours.

It's #NationalBeerDay 🍻

Enjoy some of the chemistry behind the brewing while you watch the markets slide πŸ“‰

www.compoundchem.com/2014/07/10/b...

#ChemSky πŸ§ͺ

07.04.2025 14:23 β€” πŸ‘ 73    πŸ” 27    πŸ’¬ 2    πŸ“Œ 3
Preview
The Continuing Crisis, Part XI: Feral Children, Breaking Things

More updates on what’s happening to federally funded US science. Roughly the same magic touch Trump has brought to world trade, actually.

Today’s examples are on drug-resistant gonorrhea and vaccine approvals, both of which are going to hell.

07.04.2025 17:42 β€” πŸ‘ 69    πŸ” 33    πŸ’¬ 0    πŸ“Œ 2
Preview
San Diego to take a $40 million hit in federal funding for public health Ninety-one grant-funded positions could be affected by cancellation of grants.

Just as our new Public Health Lab - which was built on key lessons learned during COVID - was set to open, the necessary funding for its operation was just pulled by DOGE/HHS.

That operation, critical to safety and public health in San Diego.

Gone.

www.sandiegouniontribune.com/2025/04/04/s...

06.04.2025 15:30 β€” πŸ‘ 268    πŸ” 139    πŸ’¬ 14    πŸ“Œ 10

We were just notified that our contract to UCSD and Scripps Research to support wastewater surveillance in San Diego (searchcovid.info) was terminated immediately for the same reasons πŸ‘‡.

That means no more genomic wastewater surveillance, and our proposed extensions to measles, Hep A, others, gone.

07.04.2025 16:29 β€” πŸ‘ 579    πŸ” 393    πŸ’¬ 17    πŸ“Œ 25
Preview
Trump promised scientific breakthroughs. Researchers say he’s breaking science. NIH funding for biomedical research has abruptly fallen by billions of dollars, with many grant decisions on hold. Trump officials say they’re reviewing the agency.

Powerful new Washington Post story up...

wapo.st/426d9fT

(Gift link)

1/n

28.03.2025 12:54 β€” πŸ‘ 344    πŸ” 147    πŸ’¬ 6    πŸ“Œ 8

This is particularly awful

The F awards are US biomedical workforce training awards

Their agenda to destroy the future of biomedical science on full display here

29.03.2025 13:01 β€” πŸ‘ 10    πŸ” 10    πŸ’¬ 1    πŸ“Œ 0

Ufffff!!!!!

🀬🀬🀬🀬🀬

29.03.2025 12:59 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Preview
Google Colab

Run BioEmu in Colab - just click "Runtime β†’ Run all"! Our notebook uses ColabFold to generate MSAs, BioEmu to predict trajectories, and Foldseek to cluster conformations.
Thanks @jjimenezluna.bsky.social for the help!
🌐 colab.research.google.com/github/sokry...
πŸ“„ www.biorxiv.org/content/10.1...

29.03.2025 09:50 β€” πŸ‘ 102    πŸ” 42    πŸ’¬ 1    πŸ“Œ 2
Preview
Trump travel ban: California colleges urge international students to rethink travel plans At least one university said it doesn't recommend international travel as a possible travel ban that could impact more than 40 countries looms.

Wow. California State University, UC-Berkeley, UC-Davis, UC-San Diego and U of SF are ALL urging foreign-born students, faculty and staff to reconsider international travel because there's no telling whether the Trump administration will allow them to re-enter.
www.desertsun.com/story/news/n...

29.03.2025 01:25 β€” πŸ‘ 442    πŸ” 184    πŸ’¬ 14    πŸ“Œ 17
Post image

Turns out a colander works pretty well for eclipse spotting.
#SolarEclipse

29.03.2025 11:05 β€” πŸ‘ 1108    πŸ” 145    πŸ’¬ 32    πŸ“Œ 6
Partial solar eclipse - top right of Sun has a crescent shaped bite taken out of it.

Partial solar eclipse - top right of Sun has a crescent shaped bite taken out of it.

Peak occlusion at about 11:05 GMT. Light cloud, which gives a halo effect.

29.03.2025 12:11 β€” πŸ‘ 8    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Post image Post image

Resignation letter from FDA’s Peter Marks (he was director of its Center for Biological Evaluation and Research)

29.03.2025 02:09 β€” πŸ‘ 101    πŸ” 57    πŸ’¬ 6    πŸ“Œ 11
Preview
UPDATE: RECOVER Long COVID pathobiology grants restored - The Sick Times Long COVID research grants from the National Institutes of Health’s RECOVER program will be restored following news stories about their abrupt cancellations and advocacy to restore the funding, accord...

🚨 BREAKING: Long COVID research grants rescinded earlier this week have been restored, according to researchers & patient reps. Advocates organized quickly yesterday in response to the news, helping reverse the decision.

Exclusive in @thesicktimes.bsky.social

thesicktimes.org/2025/03/28/u...

28.03.2025 19:36 β€” πŸ‘ 2070    πŸ” 610    πŸ’¬ 57    πŸ“Œ 65

NO TIME FOR FUTILITY, ACTION WORKS: β€œβ€¦studies now resuming include research into the pathobiology of LongCOVID in children, persistent SARSCoV2 viral reservoirs, vascular dysfunction, post-exertional malaise, reactivation of latent viruses like EpsteinBarr, & the link between SARSCoV2 & diabetes.”

28.03.2025 19:42 β€” πŸ‘ 87    πŸ” 24    πŸ’¬ 3    πŸ“Œ 1
Preview
New journal co-founded by NIH nominee raises eyebrows, misinformation fears The Journal of the Academy of Public Health claims to open up scientific communication. But its unusual editorial policies have some scientists concerned

You may have seen that the incoming NIH director and his buddies started a new journal, The Journal of the Academy of Public Health

(One clue: There is no recognized Academy of Public Health)

www.science.org/content/arti...

29.03.2025 00:36 β€” πŸ‘ 250    πŸ” 124    πŸ’¬ 13    πŸ“Œ 10

@rommieamaro is following 20 prominent accounts