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Simon van Vliet

@simonvanvliet.bsky.social

Junior Group Leader @ Biozentrum-UniBasel & DMF-UNIL Physicist turned biologist | Ecology & evolution of complex systems | Emergent behavior in microbial systems vanvlietlab.ch

578 Followers  |  267 Following  |  6 Posts  |  Joined: 12.10.2023  |  2.1362

Latest posts by simonvanvliet.bsky.social on Bluesky

DMF: Tenure Track Assistant Professor towards Associate Professor in Molecular Microbiology - Site des postulations FBM

New tenure track assistant professor position in molecular microbiology in our department @dmf-unil.bsky.social @unil.bsky.social! We are casting a wide net for an experimental molecular microbiologist. Apply here: wwwfbm.unil.ch/releve/appli...

10.06.2025 13:53 β€” πŸ‘ 112    πŸ” 162    πŸ’¬ 0    πŸ“Œ 8

How does metabolic dependency evolve at the single cell level? πŸ”„

In our new preprint, Divvya Ramesh combines microfluidics, microscopy and modelling to show that the benefits of gene loss are highly context dependent.

Check it out here: www.biorxiv.org/content/10.1...

13.05.2025 11:22 β€” πŸ‘ 14    πŸ” 7    πŸ’¬ 0    πŸ“Œ 0

🧩 PhD Position – Origins of Darwinian Inheritance 🧩

This joint PhD project between the @rug.nl (Rampal Etienne & Martijn Egas) and @utrechtuniversity.bsky.social (Bram van Dijk) explores how simple prebiotic systems could evolve reliable information transfer.

Apply here: shorturl.at/WgYMF

09.05.2025 14:55 β€” πŸ‘ 34    πŸ” 35    πŸ’¬ 2    πŸ“Œ 1
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Applications now open for UNIL Summer School on Modelling for Evo Bio (1–6 Sept 2025, Lausanne)!
Aimed at PhD students interested in formal approaches to evolutionary ecology questions like sexual selection, social & life-history evolution. Scholarships available.
Pls share! www.shorturl.at/znk5g

17.04.2025 15:21 β€” πŸ‘ 43    πŸ” 47    πŸ’¬ 0    πŸ“Œ 5

Great to see this out! πŸŽ‰ Big congratulations to @type3lab.bsky.social for leading the project and to all involved!

"Pseudomonas syringae subpopulations cooperate by coordinating flagellar and T3SS spatiotemporal dynamics to facilitate plant infection" 🌱🦠 rdcu.be/egczU

πŸ§΅β¬‡οΈ #MicroSky #PlantScience

04.04.2025 09:55 β€” πŸ‘ 14    πŸ” 7    πŸ’¬ 3    πŸ“Œ 0
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🚨We have a fully funded open PhD position in bacterial synthetic biology available in our lab (www.yschaerli.com) in beautiful Lausanne, Switzerland @dmf-unil.bsky.social @fbm-unil.bsky.social @unil.bsky.social
If you are passionate about #SynBio and #GeneCircuits, apply here: tinyurl.com/mry2xwa5

09.04.2025 08:22 β€” πŸ‘ 5    πŸ” 6    πŸ’¬ 0    πŸ“Œ 2

early career researchers: Do not miss this oportunity to present and discuss your work with an expert audience!

25.03.2025 07:14 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Apply now: Eawag Postdoctoral Fellowship πŸ“’πŸ’ͺ

The Eawag postdoctoral fellowship is designed for outstanding early-career researchers with innovative ideas

πŸ‘‰ www.eawag.ch/en/about-us/...

18.03.2025 08:21 β€” πŸ‘ 14    πŸ” 11    πŸ’¬ 0    πŸ“Œ 0

This is one of the best features I have seen on blue sky yet- a custom feed of papers from people you follow. I had to un-follow the various biorxiv channels, as it was dominant, but now I am seeing lots of cool papers from people I follow.

Great work on this feed, @paper-feed.bsky.social team!

14.03.2025 17:46 β€” πŸ‘ 90    πŸ” 42    πŸ’¬ 2    πŸ“Œ 4
'

We are recruiting @ox.ac.uk @dunnschool.bsky.social for a joint project between Kevin Foster's group and mine! Cluster hire of two postdocs interested in:
1) Mucosal immunology and oral vaccine development
my.corehr.com/pls/uoxrecru...
2) Microbiology
my.corehr.com/pls/uoxrecru...

Please share!

22.02.2025 20:07 β€” πŸ‘ 80    πŸ” 86    πŸ’¬ 0    πŸ“Œ 5

There is still time to apply to the Alma Dal Co School on Collective Behaviour! The deadline has been extended till March 16th. We would especially welcome applications from members of underrepresented groups. Limited travel grants are available. Apply now and join us! almadalcoschool.github.io

27.02.2025 07:56 β€” πŸ‘ 8    πŸ” 8    πŸ’¬ 0    πŸ“Œ 0
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Disentangling the feedback loops driving spatial patterning in microbial communities - npj Biofilms and Microbiomes npj Biofilms and Microbiomes - Disentangling the feedback loops driving spatial patterning in microbial communities

Two (!) perspective pieces published today involving people from our lab! @adelpanta.bsky.social on spatial patterning in microbial communities www.nature.com/articles/s41... and @salazarafra.bsky.social on microbial communities as evolutionary individuals www.sciencedirect.com/science/arti...

20.02.2025 14:41 β€” πŸ‘ 71    πŸ” 36    πŸ’¬ 2    πŸ“Œ 3
Schematic of factors and feedbacks driving spatial patterning in microbial communities. Spatial patterns emerge from growth and movement of cells, these are shaped by local chemical and physical environment, which in turn are shaped by activity of cells.

Schematic of factors and feedbacks driving spatial patterning in microbial communities. Spatial patterns emerge from growth and movement of cells, these are shaped by local chemical and physical environment, which in turn are shaped by activity of cells.

What determines the spatial structure of microbial communities? In our new review we discuss the factors and feedbacks that affect spatial patterning and methods to study them. Great collaboration w. @saramitri.bsky.social @adelpanta.bsky.social & @micsysecolab.bsky.social doi.org/10.1038/s415... 🦠

20.02.2025 15:00 β€” πŸ‘ 22    πŸ” 4    πŸ’¬ 0    πŸ“Œ 1
Opportunités de carrière : Research Associate position in bioinformatics support (22124)

We are looking for a bioinformatician with expertise in microbiome data analysis join our team at the University of Lausanne. The successful candidate will lead and support research projects within nccr-microbiomes.ch. More details here: shorturl.at/mC46o . Please share with potential candidates.

18.02.2025 22:09 β€” πŸ‘ 13    πŸ” 21    πŸ’¬ 1    πŸ“Œ 1
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Postdoctoral researcher –Understanding bacterial metabolism in the urinary tract

Interested in microbial #metabolism, #mucosalbiology and #UTI? Then check out the open postdoctoral position in the Mucosal Immunology Group at ETH Zurich! NB: All applications must go via the ETH job portal:

www.jobs.ethz.ch/job/view/JOP...

Closing date: 24th Feburary
πŸ§ͺπŸ§«πŸ”¬

26.01.2025 13:25 β€” πŸ‘ 39    πŸ” 37    πŸ’¬ 0    πŸ“Œ 1
Career Opportunities: Postdoctoral position in bioinformatics/gut microbiota ecology and evolution (22087)

We are looking for a postdoc in bioinformatics interested in broad questions about the ecology and evolution of host-associated microbiomes using social bees as model. Please share with potential candidates and if interested apply here: career5.successfactors.eu/career?caree...

05.02.2025 12:42 β€” πŸ‘ 26    πŸ” 24    πŸ’¬ 0    πŸ“Œ 1
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Home The Alma Dal Co School on Collective Behaviour

Only 3 weeks left to apply to the first Alma Dal Co School on Collective Behaviour! We have a great line-up of speakers and a program designed to maximize interactions between and among speakers and participants. Applications open to all ECRs (PhD - young PIs). More info: almadalcoschool.github.io

07.02.2025 09:23 β€” πŸ‘ 5    πŸ” 5    πŸ’¬ 0    πŸ“Œ 1
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Environment‐Organism Feedbacks Drive Changes in Ecological Interactions Ecological interactions are central to our understanding of the composition and function of communities, but attempts to use them as a theoretical foundation for experimental ecology have been confou....

Our framework explaining why ecological interactions change between contexts is out in Ecology Letters!
A lovely collaboration with @saramitri.bsky.social which provides experimentally-testable links between the physiology and ecology of microbes.
onlinelibrary.wiley.com/doi/10.1111/...

02.01.2025 10:53 β€” πŸ‘ 47    πŸ” 23    πŸ’¬ 1    πŸ“Œ 2
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Call for ISME Society Awards nominations - ISME We encourage our membership to nominate individuals worthy of winning one of our three prestigious awards.

Every two years, ISME celebrates the achievements of scientists who have substantially advanced the field of microbial ecology. If you know of outstanding members of the community worthy of an ISME Society Award, please fill in the nominations ballot by 31 Jan 2025πŸ‘‡πŸΌ
isme-microbes.org/call-for-ism...

10.12.2024 06:28 β€” πŸ‘ 39    πŸ” 31    πŸ’¬ 3    πŸ“Œ 0
Alma Dal Co (1989-2022), was a brilliant researcher whose work bridged physics and microbiology to reveal how metabolic interactions structure microbial communities.

Alma Dal Co (1989-2022), was a brilliant researcher whose work bridged physics and microbiology to reveal how metabolic interactions structure microbial communities.

Amazing speakers & program at the inaugural Alma Dal Co School on Collective Behavior in Venice (Sep 29-Oct 4, 2025). This interactive meeting focuses on collective behaviour across biological systems. Apply now!

almadalcoschool.github.io

13.12.2024 16:27 β€” πŸ‘ 6    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Home The Alma Dal Co School on Collective Behaviour

Great school one collective behavior in memory of Alma Dal Co next Sept in Venice. Terrific lineup of speakers
almadalcoschool.github.io

Application deadline Feb 2025, travel grants available

08.12.2024 11:41 β€” πŸ‘ 13    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
Opportunités de carrière : PhD position in gut microbiota ecology and evolution (21945)

PhD position available in our lab in πŸ‡¨πŸ‡­! Interested in microbial ecology and evolution in the context of #Symbiosis, #Microbiota, #Bees? Like to analyze shotgun metagenomics data with the possibility for fieldwork and experiments? This is for you. Apply here: shorturl.at/swHf1 #SymbioSky

06.11.2024 19:20 β€” πŸ‘ 43    πŸ” 45    πŸ’¬ 0    πŸ“Œ 3
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Excited to share: The inaugural Alma Dal Co School on Collective Behavior is coming to Venice (Sep 29-Oct 4, 2025). This unique school honors Alma (1989-2022), whose brilliant work bridging physics and microbiology revealed how metabolic interactions structure microbial communities. 1/12

04.11.2024 15:26 β€” πŸ‘ 50    πŸ” 32    πŸ’¬ 2    πŸ“Œ 4

Very happy to present our latest preprint in collaboration with @simonvanvliet.bsky.social as part of the NCCR Microbiomes. Estelle engineered uptake and leakage rates in synthetic communities of E. coli amino acid auxotrophs and studied the effects on spatial arrangement and community composition.

22.07.2024 08:02 β€” πŸ‘ 7    πŸ” 4    πŸ’¬ 0    πŸ“Œ 1
142 FB 5 Research Assistant (m/f/d) - UniversitΓ€t OsnabrΓΌck

Are you interested in mutualisms?

Have you always wondered how these cooperative interactions emerge and coevolve?

If the answer to these questions is YES, then please consider joining my vibrant group as a PhD student.

Please RT.

More detailsπŸ‘‡

shorturl.at/5ZP7R

08.07.2024 05:59 β€” πŸ‘ 6    πŸ” 14    πŸ’¬ 1    πŸ“Œ 0
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We're looking for an enthusiastic experimentalist PhD student to join our interdisciplinary group interested in the ecology & evolution of microbial communities unil.ch/mitrilab. Apply tinyurl.com/mu5swnk8 before Aug 31! Bonus: Lausanne is a beautiful place to live!

11.07.2024 07:40 β€” πŸ‘ 10    πŸ” 30    πŸ’¬ 2    πŸ“Œ 1
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#Cluster #hire @Eawag in Zurich/Switzerland!πŸ‡¨πŸ‡­

4 Tenure Track Group Leader Positions on Climate Change Adaptation w/ specific focus on alpine #biodiversity & other aspects of #climate #change adaption in #aquatic systems.

πŸ”¬πŸ§¬πŸŸπŸ¦ πŸŒŠπŸ‘πŸ”οΈ

Apply here & share widely!

apply.refline.ch/673277/1169/...

29.04.2024 12:04 β€” πŸ‘ 3    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
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Opening for a postdoctoral researcher at the Slack lab (Molecular Mucosal Immunology) in Oxford!πŸ§ͺ🧬🦠🧫

Come and join our team to work on sampling of gut antigens for IgA priming.

my.corehr.com/pls/uoxrecru...

www.slacklab.ethz.ch

Please share widely!

19.03.2024 17:42 β€” πŸ‘ 5    πŸ” 10    πŸ’¬ 0    πŸ“Œ 0
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Almost a decade after proposing this experiment in a grant application, we have a preprint! A huge experiment by
Philippe Piccardi with many helping hands to generate and analyze the data especially genomic & transcriptomic analysis by Eric Ulrich! www.biorxiv.org/content/10.1...

26.02.2024 15:08 β€” πŸ‘ 63    πŸ” 33    πŸ’¬ 4    πŸ“Œ 1
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Join us for the 2nd LS2_Systems_Biology *Theory across Biology* workshop #TaB2024 in Bern on 14 June 2024. From molecules to ecosystems. No PPTs, black board only! Flipcharts instead of posters! For theorists *and* experimentalists.
shorturl.at/hDST1

22.02.2024 15:14 β€” πŸ‘ 5    πŸ” 3    πŸ’¬ 0    πŸ“Œ 1

@simonvanvliet is following 20 prominent accounts