We have an open position for a bioinformatics/theoretical microbial ecology PhD student to study viral strategies in the global Microverse! Join us at the @microverse.bsky.social at @uni-jena.de, please apply through this link:
jobs.uni-jena.de/jobposting/9...
Most microbes don't live in shaking flasks; spatial structure shapes how microbes interact and evolve at every scale, as we discuss in our recent review @jeroenmeijer.bsky.social @simonvanvliet.bsky.social @bedutilh.bsky.social @bramvandijk.bsky.social and others
academic.oup.com/femsre/artic... 🧵👇
Wrapping up a productive week: very glad to have contributed to this review on how spatial structure shapes microbial ecology and evolution, led by @marcelbaecker.bsky.social, @bedutilh.bsky.social, @bramvandijk.bsky.social and many others. doi.org/10.1093/fems...
11.02.2026 15:46 — 👍 39 🔁 15 💬 3 📌 2Also excited to share our latest collaboration with @micsysecolab.bsky.social. Divvya Ramesh showed how spatial structure can limit evolution of metabolic dependencies.
11.02.2026 15:24 — 👍 6 🔁 2 💬 0 📌 0Huge thanks to our amazing collaborators in @nccr-antiresist.bsky.social and NCCR Microbiomes!
11.02.2026 15:21 — 👍 0 🔁 0 💬 1 📌 0Using a quantitative framework we show that this pattern emerges from the combined effect of two opposing interactions with different ranges. As a result, spatial arrangement determines overall tolerance by balancing the relative importance of these interactions.
11.02.2026 15:21 — 👍 0 🔁 0 💬 1 📌 0
Excited to share first preprint from our lab! @giubotti.bsky.social found that antibiotic tolerance in multispecies biofilms follows a surprising spatial pattern: cells survive only at intermediate distances from a partner species. 🦠 Preprint: doi.org/10.64898/202...
11.02.2026 15:21 — 👍 18 🔁 10 💬 2 📌 2
Excited to finally share the typeset version of our very first venture into microbial ecology! 🤩
Big thanks to @simonvanvliet.bsky.social for a rewarding collaboration within the NCCR Microbiomes.
@fbm-unil.bsky.social
@dmf-unil.bsky.social
New tenure track assistant professor position in molecular microbiology in our department @dmf-unil.bsky.social @unil.bsky.social! We are casting a wide net for an experimental molecular microbiologist. Apply here: wwwfbm.unil.ch/releve/appli...
10.06.2025 13:53 — 👍 112 🔁 162 💬 0 📌 8
How does metabolic dependency evolve at the single cell level? 🔄
In our new preprint, Divvya Ramesh combines microfluidics, microscopy and modelling to show that the benefits of gene loss are highly context dependent.
Check it out here: www.biorxiv.org/content/10.1...
🧩 PhD Position – Origins of Darwinian Inheritance 🧩
This joint PhD project between the @rug.nl (Rampal Etienne & Martijn Egas) and @utrechtuniversity.bsky.social (Bram van Dijk) explores how simple prebiotic systems could evolve reliable information transfer.
Apply here: shorturl.at/WgYMF
Applications now open for UNIL Summer School on Modelling for Evo Bio (1–6 Sept 2025, Lausanne)!
Aimed at PhD students interested in formal approaches to evolutionary ecology questions like sexual selection, social & life-history evolution. Scholarships available.
Pls share! www.shorturl.at/znk5g
Great to see this out! 🎉 Big congratulations to @type3lab.bsky.social for leading the project and to all involved!
"Pseudomonas syringae subpopulations cooperate by coordinating flagellar and T3SS spatiotemporal dynamics to facilitate plant infection" 🌱🦠 rdcu.be/egczU
🧵⬇️ #MicroSky #PlantScience
🚨We have a fully funded open PhD position in bacterial synthetic biology available in our lab (www.yschaerli.com) in beautiful Lausanne, Switzerland @dmf-unil.bsky.social @fbm-unil.bsky.social @unil.bsky.social
If you are passionate about #SynBio and #GeneCircuits, apply here: tinyurl.com/mry2xwa5
early career researchers: Do not miss this oportunity to present and discuss your work with an expert audience!
25.03.2025 07:14 — 👍 1 🔁 2 💬 0 📌 0
Apply now: Eawag Postdoctoral Fellowship 📢💪
The Eawag postdoctoral fellowship is designed for outstanding early-career researchers with innovative ideas
👉 www.eawag.ch/en/about-us/...
This is one of the best features I have seen on blue sky yet- a custom feed of papers from people you follow. I had to un-follow the various biorxiv channels, as it was dominant, but now I am seeing lots of cool papers from people I follow.
Great work on this feed, @paper-feed.bsky.social team!
We are recruiting @ox.ac.uk @dunnschool.bsky.social for a joint project between Kevin Foster's group and mine! Cluster hire of two postdocs interested in:
1) Mucosal immunology and oral vaccine development
my.corehr.com/pls/uoxrecru...
2) Microbiology
my.corehr.com/pls/uoxrecru...
Please share!
There is still time to apply to the Alma Dal Co School on Collective Behaviour! The deadline has been extended till March 16th. We would especially welcome applications from members of underrepresented groups. Limited travel grants are available. Apply now and join us! almadalcoschool.github.io
27.02.2025 07:56 — 👍 8 🔁 8 💬 0 📌 0
Two (!) perspective pieces published today involving people from our lab! @adelpanta.bsky.social on spatial patterning in microbial communities www.nature.com/articles/s41... and @salazarafra.bsky.social on microbial communities as evolutionary individuals www.sciencedirect.com/science/arti...
20.02.2025 14:41 — 👍 73 🔁 36 💬 2 📌 3
Schematic of factors and feedbacks driving spatial patterning in microbial communities. Spatial patterns emerge from growth and movement of cells, these are shaped by local chemical and physical environment, which in turn are shaped by activity of cells.
What determines the spatial structure of microbial communities? In our new review we discuss the factors and feedbacks that affect spatial patterning and methods to study them. Great collaboration w. @saramitri.bsky.social @adelpanta.bsky.social & @micsysecolab.bsky.social doi.org/10.1038/s415... 🦠
20.02.2025 15:00 — 👍 23 🔁 4 💬 0 📌 1We are looking for a bioinformatician with expertise in microbiome data analysis join our team at the University of Lausanne. The successful candidate will lead and support research projects within nccr-microbiomes.ch. More details here: shorturl.at/mC46o . Please share with potential candidates.
18.02.2025 22:09 — 👍 13 🔁 21 💬 1 📌 1
Interested in microbial #metabolism, #mucosalbiology and #UTI? Then check out the open postdoctoral position in the Mucosal Immunology Group at ETH Zurich! NB: All applications must go via the ETH job portal:
www.jobs.ethz.ch/job/view/JOP...
Closing date: 24th Feburary
🧪🧫🔬
We are looking for a postdoc in bioinformatics interested in broad questions about the ecology and evolution of host-associated microbiomes using social bees as model. Please share with potential candidates and if interested apply here: career5.successfactors.eu/career?caree...
05.02.2025 12:42 — 👍 26 🔁 24 💬 0 📌 1
Only 3 weeks left to apply to the first Alma Dal Co School on Collective Behaviour! We have a great line-up of speakers and a program designed to maximize interactions between and among speakers and participants. Applications open to all ECRs (PhD - young PIs). More info: almadalcoschool.github.io
07.02.2025 09:23 — 👍 5 🔁 5 💬 0 📌 1
Our framework explaining why ecological interactions change between contexts is out in Ecology Letters!
A lovely collaboration with @saramitri.bsky.social which provides experimentally-testable links between the physiology and ecology of microbes.
onlinelibrary.wiley.com/doi/10.1111/...
Every two years, ISME celebrates the achievements of scientists who have substantially advanced the field of microbial ecology. If you know of outstanding members of the community worthy of an ISME Society Award, please fill in the nominations ballot by 31 Jan 2025👇🏼
isme-microbes.org/call-for-ism...
Alma Dal Co (1989-2022), was a brilliant researcher whose work bridged physics and microbiology to reveal how metabolic interactions structure microbial communities.
Amazing speakers & program at the inaugural Alma Dal Co School on Collective Behavior in Venice (Sep 29-Oct 4, 2025). This interactive meeting focuses on collective behaviour across biological systems. Apply now!
almadalcoschool.github.io
Great school one collective behavior in memory of Alma Dal Co next Sept in Venice. Terrific lineup of speakers
almadalcoschool.github.io
Application deadline Feb 2025, travel grants available
PhD position available in our lab in 🇨🇭! Interested in microbial ecology and evolution in the context of #Symbiosis, #Microbiota, #Bees? Like to analyze shotgun metagenomics data with the possibility for fieldwork and experiments? This is for you. Apply here: shorturl.at/swHf1 #SymbioSky
06.11.2024 19:20 — 👍 42 🔁 45 💬 0 📌 3