Dr Katherine Duncan's Avatar

Dr Katherine Duncan

@kateduncan.bsky.social

Senior Lecturer, Newcastle Uni UK We study the chemical language of bacteria (& what influences it) for antibiotic discovery http://www.medicinesfromthesea.com Editor Microbiology, Young Academy of Scotland, SAB RSC NatProdRep & EAB ACS JNatProd

2,436 Followers  |  991 Following  |  479 Posts  |  Joined: 05.09.2023  |  2.1279

Latest posts by kateduncan.bsky.social on Bluesky

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Mid-career Group Leader position in AI in genomics at Institut Pasteur, Paris - Research Institut Pasteur and the CNRS are launching a call for a mid-career group leader position in AI in genomics. We are looking for an experienced researcher (typically with > 8 years of research experien...

Opening of a Group Leader position in AI in genomics at Institut Pasteur @pasteur.fr , Paris research.pasteur.fr/en/call/mid-...

06.12.2025 09:48 β€” πŸ‘ 8    πŸ” 14    πŸ’¬ 0    πŸ“Œ 0
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The undiscovered natural product potential of Actinomycetes The Journal of Antibiotics - The undiscovered natural product potential of Actinomycetes

Recommended reading for those of us who study actinomycetes using untargeted metabolomics. Incredible work by @amcaraballor.bsky.social, @pieterdorrestein.bsky.social, and collaborators. rdcu.be/eSRxT

03.12.2025 22:40 β€” πŸ‘ 12    πŸ” 6    πŸ’¬ 0    πŸ“Œ 1
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Sunset 15:40

06.12.2025 16:10 β€” πŸ‘ 7    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Description Please note that job descriptions are not exhaustive, and you may be asked to take on additional duties that align with the key responsibilities ment...

We're advertising for a bacteriology technician and a post-doc to work on AI-guided antibiotic development as part of a large multidisciplinary Fleming Initiative project:
www.imperial.ac.uk/jobs/search-...

www.imperial.ac.uk/jobs/search-...

03.12.2025 07:23 β€” πŸ‘ 13    πŸ” 20    πŸ’¬ 0    πŸ“Œ 0

If you or someone you know is looking for a post-doctoral position working on mycobacterial envelope biology, please get in touch. I am recruiting here at the University of Western Ontario in London, Ontario, Canada.

02.12.2025 15:21 β€” πŸ‘ 19    πŸ” 33    πŸ’¬ 1    πŸ“Œ 2
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Fantastic to have Prof Matthias Wilmanns from EMBL Hamburg hosted by @kshbeckham.bsky.social to give a @mhd-newcastle.bsky.social seminar on mycobacterial infection #dreamtheme

02.12.2025 12:13 β€” πŸ‘ 8    πŸ” 6    πŸ’¬ 1    πŸ“Œ 1
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Panorama - The Truth About Forever Chemicals Reporter Catrin Nye reveals how PFAS can affect health and contaminate the environment, and she asks if the UK government is doing enough to keep us safe.

Watch Panorama tonight on BBC One and iPlayer: β€œThe Truth About Forever Chemicals”.
Our policy advisor Stephanie Metzger shares expert insights on how to tackle these persistent pollutants found in food, water and products...
Catch up: bbc.co.uk/iplayer/epis...
#ForeverChemicals #Panorama

01.12.2025 15:12 β€” πŸ‘ 7    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
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Today, we are lucky to have Imane El Meouche from IAME, France to give a MCM seminar @medicalsciencesncl.bsky.social (chaired by @henrikstrahl.bsky.social) on antibiotics tolerance in E. Coli

01.12.2025 13:07 β€” πŸ‘ 23    πŸ” 6    πŸ’¬ 1    πŸ“Œ 0

Now properly published at @natcomms.nature.com with few additional experiments incl. demonstration of Daptomycin's ability to depolarise non-growing cells.
See the original preprint-thread for a summary of our findings.
www.nature.com/articles/s41...
#microsky

24.11.2025 20:20 β€” πŸ‘ 78    πŸ” 28    πŸ’¬ 0    πŸ“Œ 2
Top: (Top row) Sensitivity of S. coelicolor mutants to GlcNAc. Spores (5 × 105 CFU) of S. coelicolor M145 and its mutant derivatives βˆ†nagB, SMA11, βˆ†nagBβˆ†nagS, βˆ†nagBβˆ†nagSC (βˆ†nagBβˆ†nagS expressing nagS) and βˆ†nagBβˆ†nagSE (βˆ†nagBβˆ†nagS with empty plasmid pSET152) were streaked on MM agar plates with 1% mannitol (Mann) and 1% mannitol plus 10 mM GlcNAc (GlcNAc). (Bottom row) NagS and its role in GlcNAc sensing. Spores of M145 and βˆ†nagS were plated on MM and R5 with 0, 0.001, 0.01, 0.1, 1, 5, 10, 20, 50, 100, 150, and 200 mM GlcNAc. Note that nagS mutants hardly respond to GlcNAc.  Bottom: Model for the metabolic control of development by GlcNAc and NagS. During late vegetative growth of streptomycetes, the old vegetative or substrate hyphae are degraded in a process of programmed cell death (PCD), to produce the nutrients required to build the aerial mycelium (see mycelial drawings on the right). Mycelial lysis results in breakdown of the cell-wall, leading to the accumulation of GlcNAc-6P, which is a major nutritional signal for the onset of development and antibiotic production. NagS converts GlcNAc-6P into 6P-chromogen I (denoted as X-Ac-6P), which in turn is deacetylated by NagA into a toxic metabolite (denoted as X-6P) that resembles ribose. The toxic metabolite promotes cell lysis, thus releasing more GlcNAc-6P that serves as substrate for NagS and NagA. A salvage pathway then switches off the toxic pathway again. For this, GlcNAc-6P is converted by NagA and NagB into Fructose-6P (Fru-6P), which enters the pentose phosphate pathway (PPP), thereby producing 6-phosphogluconate (6-PG), a metabolic inhibitor of NagS. Thus, production of toxic metabolites ceases and the transition to aerial growth can be initiated. Arrows with round ends represent inhibition, dashed arrow shows proposed activity.

Top: (Top row) Sensitivity of S. coelicolor mutants to GlcNAc. Spores (5 × 105 CFU) of S. coelicolor M145 and its mutant derivatives βˆ†nagB, SMA11, βˆ†nagBβˆ†nagS, βˆ†nagBβˆ†nagSC (βˆ†nagBβˆ†nagS expressing nagS) and βˆ†nagBβˆ†nagSE (βˆ†nagBβˆ†nagS with empty plasmid pSET152) were streaked on MM agar plates with 1% mannitol (Mann) and 1% mannitol plus 10 mM GlcNAc (GlcNAc). (Bottom row) NagS and its role in GlcNAc sensing. Spores of M145 and βˆ†nagS were plated on MM and R5 with 0, 0.001, 0.01, 0.1, 1, 5, 10, 20, 50, 100, 150, and 200 mM GlcNAc. Note that nagS mutants hardly respond to GlcNAc. Bottom: Model for the metabolic control of development by GlcNAc and NagS. During late vegetative growth of streptomycetes, the old vegetative or substrate hyphae are degraded in a process of programmed cell death (PCD), to produce the nutrients required to build the aerial mycelium (see mycelial drawings on the right). Mycelial lysis results in breakdown of the cell-wall, leading to the accumulation of GlcNAc-6P, which is a major nutritional signal for the onset of development and antibiotic production. NagS converts GlcNAc-6P into 6P-chromogen I (denoted as X-Ac-6P), which in turn is deacetylated by NagA into a toxic metabolite (denoted as X-6P) that resembles ribose. The toxic metabolite promotes cell lysis, thus releasing more GlcNAc-6P that serves as substrate for NagS and NagA. A salvage pathway then switches off the toxic pathway again. For this, GlcNAc-6P is converted by NagA and NagB into Fructose-6P (Fru-6P), which enters the pentose phosphate pathway (PPP), thereby producing 6-phosphogluconate (6-PG), a metabolic inhibitor of NagS. Thus, production of toxic metabolites ceases and the transition to aerial growth can be initiated. Arrows with round ends represent inhibition, dashed arrow shows proposed activity.

GlcNAc build-up acts as a key metabolic signal in #Streptomyces, but how does it triggers developmental responses? @gillesvanwezel.bsky.social &co show that the enzyme NagS dehydrates GlcNAc-6P into a reactive intermediate, triggering a toxicity-based checkpoint @plosbiology.org πŸ§ͺ plos.io/44pE08I

28.11.2025 14:00 β€” πŸ‘ 9    πŸ” 7    πŸ’¬ 1    πŸ“Œ 0
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Last Monday Dr Zach Maw @zmaw.bsky.social joined the Duncan lab (all the way from Canada πŸ‡¨πŸ‡¦) as a postdoc - Zach will be setting up small molecule metabolomics in the mass spec facility @medicalsciencesncl.bsky.social and working on natural product drug discovery - welcome Zach!

28.11.2025 09:38 β€” πŸ‘ 11    πŸ” 1    πŸ’¬ 0    πŸ“Œ 1

Marla was funded by CONAHCYT MΓ¨xico on an international PhD scholarship along with a @unistrathclyde.bsky.social global research scholarship - research truly is global and we look forward to continued collaboration with her in MΓ©xico πŸ‡²πŸ‡½ #proudsupevisor #marinenaturalproducts #actinomycetes

26.11.2025 15:34 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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A huge congratulations to Dr Marla Macias! PhD student number 6 for the Duncan lab - what a privilege it’s been to have such a wonderful human & scientist be part of the group for the last 3.5 years. Many thanks to Dan Walker (Strathclyde) & Rainer Ebel (Aberdeen) for acting as Marla’s examiners πŸ₯‚

26.11.2025 15:28 β€” πŸ‘ 11    πŸ” 1    πŸ’¬ 2    πŸ“Œ 1

‼️Research update - the last-resort πŸ’Šantibiotic daptomycin attacks🧫bacteria through two independent mechanisms & IM30 protein LiaH helps remodel membranes under stress. Great work by @henrikstrahl.bsky.social & @jbuttresssci.bsky.social @newcastleuni.bsky.social team
#microsky #BBSRC #sLoLa ⬇️

25.11.2025 14:39 β€” πŸ‘ 7    πŸ” 2    πŸ’¬ 0    πŸ“Œ 1
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Microvolume DNA extraction methods for microscale amplicon and metagenomic studies - ISME Communications ISME Communications - Microvolume DNA extraction methods for microscale amplicon and metagenomic studies

Oh wow πŸ˜… that’s a lot of samples! Most I’ve done is 50 preps a day! Yeah prob some kind of micro scale extraction with bead capture then - there’s some pretty detailed methods and figures in the SI of www.nature.com/articles/s43...

24.11.2025 14:00 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

High-throughput DNA extraction from soil: experiences? best kits? best tools? If you had a decent chunk of money to throw at it, what system would you set up to make it fast and high quality? 🌾 πŸ§ͺ πŸ”¬ 🦠

24.11.2025 13:15 β€” πŸ‘ 4    πŸ” 6    πŸ’¬ 4    πŸ“Œ 0

MP biomedicals spin kit for soil is what we’ve used - it’s not high throughput but seems to be consistently yielding good results (high quality) even for problematic soil / sediment. Would be interested to see the responses you get for making it fast!

24.11.2025 13:21 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Yes it was, the way home was worse! 🧊

21.11.2025 06:59 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Bacteriologists - save the date for the next BacNet meeting in September 2026 #BacNet26 organised by @lalouxlab.bsky.social

20.11.2025 08:58 β€” πŸ‘ 22    πŸ” 8    πŸ’¬ 0    πŸ“Œ 0
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As part of the WHO World AMR Awareness Week a group of engaged undergraduate students, led by Eloise Nelson, have organised a @microbiologysociety.org sponsored seminars:
Dr Ishwar Singh (University of Liverpool) & Dr Tom Hellyer (Newcastle University) @medicalsciencesncl.bsky.social #antibiotics

20.11.2025 15:25 β€” πŸ‘ 6    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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First snow of the year - love it!

20.11.2025 07:07 β€” πŸ‘ 14    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Congratulations to Dr Adam Hunt for a very successful PhD defense! Adam was supervised at the University of Warwick by Dr Lona Allhalaf, Prof Greg Challis and Prof Chris Corre (internal examiner Dr Fabrizio Alberti) βœ¨πŸŽ„πŸŽ“πŸ₯‚ #naturalproducts #streptomyces

19.11.2025 16:05 β€” πŸ‘ 8    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Congratulations Jess and team, excellent news!!

18.11.2025 13:11 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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EASTBIO: When Phages Collide: Understanding How Multiple Prophages Shape Bacterial Behaviour at University of St Andrews on FindAPhD.com PhD Project - EASTBIO: When Phages Collide: Understanding How Multiple Prophages Shape Bacterial Behaviour at University of St Andrews, listed on FindAPhD.com

🚨 PhD opportunity! 🚨
Join us at St Andrews to study how multiple prophages shape bacterial behaviour & AMR.
Co-supervised with @tatianadimitriu.bsky.social
This is a competition-based EASTBIO PhD.
Full details and the application link are in the advert πŸ‘‡
www.findaphd.com/phds/project...

17.11.2025 15:13 β€” πŸ‘ 9    πŸ” 11    πŸ’¬ 0    πŸ“Œ 1

Theres still time to apply for our PhD project on UPEC/immune cell interactions. Deadline December 4th

16.11.2025 20:22 β€” πŸ‘ 7    πŸ” 10    πŸ’¬ 0    πŸ“Œ 0
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The walk home

17.11.2025 16:43 β€” πŸ‘ 7    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Deaths linked to antibiotic-resistant superbugs rose 17% in England in 2024 Data also shows an average of nearly 400 newly reported cases of antibiotic-resistant infections a week last year

β€˜The latest surveillance data found that the number of antibiotic-resistant infections in 2024 equated to an average of nearly 400 newly reported cases a week.’
www.theguardian.com/society/2025...

13.11.2025 23:27 β€” πŸ‘ 18    πŸ” 12    πŸ’¬ 0    πŸ“Œ 1
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Exciting Opportunity: Biomolecular Science Fellowship Day The School ofΒ Biology at the University of St Andrews is inviting applications from outstanding visionary Research Fellow andΒ FutureΒ LeaderΒ candidatesΒ to attend theΒ Biomolecular Science (BMS)Β Fello…

πŸ“£ Calling all senior microbiology postdocs! The University of St Andrews is inviting applications from outstanding visionary Research Fellow and Future Leader candidates to attend a Biomolecular Science Fellowship Day. Applications due by 12th Dec, see link for full details: tinyurl.com/4n3na8vn

05.11.2025 09:57 β€” πŸ‘ 11    πŸ” 14    πŸ’¬ 0    πŸ“Œ 0
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Conflicts between the DNA replication and repair machineries promote cell death in Gram-positive bacteria Cellular proliferation relies on the successful coordination and completion of genome replication and segregation. To help achieve this, many bacteria utilize regulatory pathways that ensure DNA repli...

New paper alert! DNA replication and repair conflicts lead to cell death in gram positive bacteria, possible new targets for novel antimicrobials.
@microbiologysociety.org @winterhalterlab.bsky.social www.microbiologyresearch.org/content/jour...

11.11.2025 16:59 β€” πŸ‘ 8    πŸ” 8    πŸ’¬ 0    πŸ“Œ 0
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Brilliant to have Prof Malcolm White from the University of St Andrews giving a Newcastle University Biosciences Institute seminar (hosted by @heathmurraylab.bsky.social) #microbiology #phage #bacteriology

12.11.2025 13:11 β€” πŸ‘ 14    πŸ” 1    πŸ’¬ 0    πŸ“Œ 1

@kateduncan is following 20 prominent accounts