GenePattern

Genomics to Notebook (g2nb): extending the computational notebook An environment that integrates Jupyter with Galaxy, allowing tools to be added as notebook cells, and providing access to thousands of bioinformatics tools from within a notebook interface.

The Genomics to Notebook (g2nb) environment is featured on the @galaxyproject.bsky.social blog. Read about how to use Galaxy, IGV, and other bioinformatics tools from within a @jupyter.org notebook interface!

galaxyproject.org/news/2025-04...

#nciitcr #bioinformatics

14.04.2025 18:18 — 👍 3    🔁 0    💬 0    📌 0

GitHub - broadinstitute/Tangram: Spatial alignment of single cell transcriptomic data. Spatial alignment of single cell transcriptomic data. - GitHub - broadinstitute/Tangram: Spatial alignment of single cell transcriptomic data.

Tangram is now available on GenePattern! 🎉 Map sc-RNA-seq data onto spatial gene expression data. GPU & CPU compatible for flexible workflows.
📷 GitHub: t.ly/07w-M
👉 CPU: t.ly/9G2lJ
👉GPU: t.ly/XO8qA
#nciitcr
@broadinstitute.org

12.12.2024 20:39 — 👍 2    🔁 0    💬 0    📌 0