PearTree β Phylogenetic Tree Viewer
So I pleased to announce the conceptual spawn of FigTree: PearTree (acronym still to be finalised). If you want to dive right in it is hosted as a web app here: artic-network.github.io/peartree (click the βExample...β button for immediate candy and then click every button you can find).
28.02.2026 19:01 β
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Amazing peppered moth story from Saccheri lab - same locus, but different structural variants, underly parallel evolution of industrial melanism in the UK and across continental Europe.
27.02.2026 13:41 β
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Heliconius erato demophoon sat on a pink, yellow and white lantana flower. The left side of the butterfly is white, while the right side is the usual black and red, but with some white clonal patches.
New preprint form me and the McMillan lab at STRI and Martin lab at GWU, digging into scale cell type specification and differentiation in Heliconius wings, with some insights on the lncRNA gene ivory.
www.biorxiv.org/content/10.6...
Comments/suggestions welcome!
27.02.2026 18:36 β
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Are you a computational postdoc or even in the last year of your PhD and you want to set up your own lab? Want to work in one of the most multi-disciplinary and multi-national institutions in the world? Want to be a leader in understanding biology - molecules up? Apply below!
26.02.2026 19:10 β
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seminar announcement with photos of speakers and talk titles
The integration of speciation seminar series is restarting, with the first session coming up on *Tuesday March 3rd @ 5pm CET*, featuring two talks by @naturalselection.bsky.social and @andreaestandia.bsky.social + career Q&A with @markravinet.bsky.social as part of the ECR in Speciation theme.
25.02.2026 16:29 β
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New pre-print with some updates on ivory:miR193 in a highly polymorphic moth.
www.biorxiv.org/content/10.6...
We mapped ivory (again!?) this time controlling aspects of camouflage in Anticarsia gemmatalis. Mapping, SVs, Expression and Function.
Comments/suggestions welcome!
25.02.2026 19:33 β
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Efficient Estimation of Nucleotide Diversity and Divergence Using Callable Loci (and More)
Abstract. The increasing scale of population genomic datasets presents computational challenges in estimating summary statistics such as nucleotide diversi
@cademirch.bsky.social @erikenbody.bsky.social TB Sackton & @russcd.bsky.social introduce Callable Loci And More (clam), a tool that leverages callable loci to accurately estimate population genetic statistics (Ο, dxy, and FST).
π doi.org/10.1093/molbev/msaf282
#evobio #molbio #compbio
15.12.2025 15:09 β
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@pratikkatte.bsky.social and I just released Lorax π², a tool for interactive exploration of biobank-scale ancestral recombination graphs (ARGs).
If youβve ever wanted to scroll across the ancestries of thousands of genomesβ¦ this is for you.
24.02.2026 15:19 β
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Research Laboratory Technician (Part Time, Fixed Term)
An 80% FTE Research Technician position is available in the Social Fluids Laboratory, led by Dr Adria LeBoeuf, in the Department of Zoology at the University of Cambridge. This position is part of a
I'm hiring a technician! www.cam.ac.uk/jobs/researc...
An 80% role in a 4-yr BBSRC project and hopefully beyond. Looking for someone to support the @socialfluids.bsky.social π§ͺour ants π and our projects.
Looking for someone kind + conscientious + reliable who takes pride in a job well done.
13.02.2026 12:33 β
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Interactive exploration of biobank-scale ancestral recombination graphs with Lorax. https://www.biorxiv.org/content/10.64898/2026.02.19.706861v1
24.02.2026 08:33 β
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Selection-driven color variation in the aposematic strawberry poison frog, Oophaga pumilio
Aguilar-GΓ³mez et al. use exome sequencing of 347 strawberry poison frogs to uncover
the genetic basis of color variation. They identify that kit, ttc39b, and bco1 underlie
blue-red, yellow-red, and gr...
The last chapter of my PhD is finally out !!!! In the same species, on neighboring islands, we see radically different warning colors emerge. Evolution in action:
Selection-driven color variation in the aposematic strawberry poison frog, Oophaga pumilio: Current Biology www.cell.com/current-biol...
18.02.2026 20:36 β
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Calibrating and documenting host-switching and evolution of incompatibility loci for two closely related Wolbachia clades https://www.biorxiv.org/content/10.64898/2026.02.13.705778v1
15.02.2026 06:15 β
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A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
How could a simple self-replicating system emerge at the origins of life? RNA polymerase ribozymes can replicate RNA, but existing ones are so large that their self-replication seems impossible. Could they be smaller?
Excited to share our latest work in @science.org on a new small polymerase.
1/n
13.02.2026 11:42 β
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Aspergillus fumigatus - 29.9 crossovers per homologous chromosome pair! That makes about 1500 recombination map units per chromosome....
16.02.2026 19:38 β
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It was great to start the week off by welcoming the second cohort of budding curators to the Project Psyche Genome Curation Workshop! Over the next two weeks they will become experts in piecing together genomes and will use these skills to curate some Project Psyche genomes! ππ§¬
16.02.2026 19:46 β
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Estimating Organism Abundance Using WithinβSample Haplotype Frequencies of eDNA Data
Environmental DNA (eDNA) provides powerful insights into species presence and community composition but remains limited in its capacity to infer species abundance or population structure. Here, we sh...
𧬠My haplotype paper is out!
We show that deviations between within-sample and population-level haplotype frequencies can be used to estimate how many individuals contributed to an eDNA sample.
No tissue references needed, just metabarcoding data and some population genetics.
#eDNA #PopGen
13.02.2026 16:54 β
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On March 3rd @ 5pm CET, we are re-starting the Integration of speciation seminar series! The first 3 sessions feature talks by *Early-Career Researchers*, and include a Q&A with an established PI about their career path.
Sign up to get the link: speciation-network.pages.ist.ac.at/seminar-seri...
09.02.2026 15:40 β
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Davis Summer Population Genomics Program
Want to learn population genetics? Please fill out this form to indicate your potential interest in a 2-week intensive online summer population genetics course taught by Jeffrey Ross-Ibarra and Graham...
Fun news! @gcbias.bsky.social and I are teaching a 2-week online population genetics workshop this summer to raise money for the Center for Population Biology at UC Davis. We're trying to gauge interest -- please fill this out if you might be interested! And please share broadly!
09.02.2026 18:24 β
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New paper by my lab! PhD student @fallonmeng.bsky.social set out to use whole genome sequencing of Spotted Lanternfly from China & the US to better understand the invasion... and discovered that adapting to the city may be the key to their invasive success!
royalsocietypublishing.org/rspb/article...
08.02.2026 21:23 β
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A new preprint with Beatriz Vicoso, where we highlight that a common observation in molecular evolutionβX chromosomes adapting faster than autosomesβdoesn't quite add up. So we tested a new theory (www.pnas.org/doi/abs/10.1...) in fruit flies, mice and humans...
08.02.2026 09:53 β
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Assessing Ancient DNA Sampling Strategies for Natural Selection Inference in Humans Using Allele Frequency Time Series Data
Abstract. The increased availability of genomic data from ancient humans allows estimating the strength of natural selection at a given locus using time se
Interested in using aDNA time-series datasets to estimate selection?
Our study "Assessing Ancient DNA Sampling Strategies for Natural Selection Inference in Humans Using Allele Frequency Time Series Data" is now out in GBE! doi.org/10.1093/gbe/... @genomebiolevol.bsky.social @cegamorim.bsky.social
03.02.2026 09:17 β
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New preprint from our big collaborative evolution experiment in 9 whole lakes in Alaska, written by McGill grad student @lucaseckert.bsky.social
www.biorxiv.org/content/10.6...
What happens if you put a mixture of multiple source populations together to complete & evolve in multiple new lakes?
05.02.2026 20:41 β
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The genetic architecture of local adaptation is historically contingent https://www.biorxiv.org/content/10.64898/2026.02.01.703099v1
03.02.2026 08:31 β
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In #GENETICS, @hildeschneemann.bsky.social and John Welch introduce a simple fitness landscape model to predict hybrid fitness with arbitrary ploidy and an arbitrary number of hybridizing lineages using data from #maize and rye. buff.ly/E24fZsM
02.02.2026 14:02 β
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I am looking for a PhD student to join my new Socio-Eco-Evo group, hosted in Katie Peichel's Evolutionary Ecology Division @ University of Bern. We're offering a fully funded 4-year position, studying social plasticity and behavioral adaptation among stickleback in Greenland. Please share around!
02.02.2026 12:01 β
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