New paper in Imaging Neuroscience by Marc-Antoine Fortin, PΓ₯l Erik Goa, et al:
GOUHFI: A novel contrast- and resolution-agnostic segmentation tool for ultra-high-field MRI
doi.org/10.1162/IMAG...
@storrisi.bsky.social
{f,s,d}MRI Research Scientist @ SFVA + UCSF
New paper in Imaging Neuroscience by Marc-Antoine Fortin, PΓ₯l Erik Goa, et al:
GOUHFI: A novel contrast- and resolution-agnostic segmentation tool for ultra-high-field MRI
doi.org/10.1162/IMAG...
FWIW: our group collects a lot of highly-accelerated fMRI at 3T and 7T; as you know the single band reference images have a ton more contrast than the accelerated data. However, I've never once needed to use them because afni_proc does so well with alignment and blip-up/down distortion correction.
23.10.2025 16:55 β π 3 π 0 π¬ 0 π 0Since I canβt work my day job, Iβm back to my side gig. 7 handmade dichroic stained glass brains up for grabs tonight at 7pm EST at www.brainedglass.com
22.10.2025 22:01 β π 68 π 15 π¬ 1 π 4thank you peircej, TEParsons and mdcutone for your tireless work!
22.10.2025 22:02 β π 1 π 0 π¬ 0 π 0hey MRI-ers: 5+ mins of detail about this detail! no but srsly good to know this exists youtu.be/SPNPZJingZA?...
14.10.2025 23:19 β π 0 π 0 π¬ 0 π 0A lot of people think that every international student admitted means one fewer spot for domestic students, when the opposite is more likely true - the tuition revenue international students bring allows public universities to provide substantial discounts to domestic students, improving access.
29.09.2025 20:18 β π 5877 π 1698 π¬ 81 π 64i love this idea so much but the code is breaking on me. i hope the developers can fix the Test=failing and deploy-docs=Failing on the repo
26.09.2025 03:02 β π 0 π 0 π¬ 0 π 0tempting youtube.com/watch?v=DC2p...
24.09.2025 20:06 β π 0 π 0 π¬ 0 π 0i can think of quite a few other tools that i wish would offer this to their users :-)
16.09.2025 20:20 β π 2 π 0 π¬ 0 π 0New preprint from stellar IRTG PhD student Amelie Rauland + team on white matter bundle reconstruction! Shows that WM bundles can be reliably extracted from simple 32-direction dMRI & features predict cognition - huge potential for legacy and clinical data. Thread π
www.biorxiv.org/cgi/content/...
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06.09.2025 03:00 β π 0 π 0 π¬ 0 π 0From a few years ago but it disappeared off yt so I recently re-uploaded. SurfLayers demo. #tbt youtu.be/Py0a8O2h-gc?...
04.09.2025 19:03 β π 5 π 2 π¬ 0 π 0Our review discussing the potential use of laminar fMRI for probing the role of cortical layers in epileptic seizure propagation and spread as well as it possible future clinical applications out in Brain (well as accepted manuscript!)
academic.oup.com/brain/advanc...
why would someone be 49% sad at such fresh delicious ingredients?
03.09.2025 23:08 β π 1 π 0 π¬ 0 π 0I miss the old brand #CDC
28.08.2025 22:00 β π 7067 π 1749 π¬ 97 π 72When powering fMRI studies, sample size is king, but scan duration can also be a powerful tool, improving phenotypic prediction and cost-efficiency, a new analysis shows
By @claudia-lopez.bsky.social
#neuroskyence
www.thetransmitter.org/fmri/longer-...
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18.08.2025 17:45 β π 0 π 0 π¬ 0 π 0IMHO somewhere in a cheat sheet should be: (a) emphasis that the menu up top changes depending on whether the builder or coder windows are active (b) at least *mention* the "Code" module; an extremely powerful feature and would appeal to a more advanced audience. looking forward to the cheat sheet!
18.08.2025 17:45 β π 2 π 0 π¬ 0 π 0looks like a great resource www.ipem.ac.uk/resources/mr...
14.08.2025 06:52 β π 0 π 0 π¬ 0 π 0@UCLA is a global leader in research, innovation, education, and healthcare. The federal governmentβs $1B demand would devastate the nationβs top public research university, cut off life-saving care, and halt tech and economic growth. #StandUpForUC bit.ly/standuc
11.08.2025 17:58 β π 18 π 4 π¬ 0 π 0i'm collecting a super small FOV and want a lateralized fiducial marker that's not focal like a vitamin E capsule but rather like a "strip" so it'll be present despite where I place the acquisition window. ideas? dielectric pads are too thick and obviously i wouldn't want to place only 1
07.08.2025 17:04 β π 0 π 0 π¬ 0 π 0lovely little demo resources.nerdfirst.net/sampling.html
06.08.2025 15:15 β π 0 π 0 π¬ 0 π 0A series of talks on 7T (f)MRI from the SIEMENS UHF user meeting in Frankfurt are now online:
www.magnetomworld.siemens-healthineers.com/clinical-cor...
i watched it on youtube! CONGRATS IT WAS AWESOME! ππ
05.08.2025 15:16 β π 1 π 0 π¬ 1 π 0Just dropped in @natcomms.nature.com: we show that re-engaging a thalamicβventral tegmental circuit with deep brain stimulation can reignite consciousness in patients with severe brain injury. Work led by Aaron Warren, with @andreashorn.org @foxmdphd.bsky.social @ others! tinyurl.com/4kz8j89b
21.07.2025 21:39 β π 27 π 18 π¬ 0 π 2Cycling on the Freeway: The perilous state of open-source neuroscience software: direct.mit.edu/imag/article...
25.07.2025 15:59 β π 1 π 0 π¬ 0 π 0thanks SPM25 for finally catching up with AFNI and FSL with distortion correction using phase reversed pairs of images
18.07.2025 20:47 β π 0 π 0 π¬ 0 π 0Ultra-high gradient connectomics and microstructure MRI scanner for imaging of human brain circuits across scales rdcu.be/ewDRc
17.07.2025 16:56 β π 7 π 3 π¬ 0 π 1instacorr needed a revamp and iβm thrilled itβs by you!
15.07.2025 20:18 β π 1 π 0 π¬ 0 π 0