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Posting bioinformatics-related publications daily Sourced from PubMed: https://pubmed.ncbi.nlm.nih.gov/ A product of MAB: https://midauthorbio.com/ Follow us at: https://bsky.app/profile/midauthorbio.bsky.social

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Latest posts by thedailypub.bsky.social on Bluesky

Metabolic engineering and adaptive laboratory evolution of Kluyveromyces Marxianus for lactic acid production. Published in Microbial cell factories

Lactic acid (LA) is a key component in making eco-friendly, biodegradable plastic, but traditionally it's expensive to produce sustainably. By using the yeast Kluyveromyces marxianus, scientists managed to boost LA production using less costly methods. They identified and perfected a strain, Km3,...

05.08.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Metagenomic Analysis Reveals Northwest Pacific Ocean as a Reservoir and Evolutionary Hub of Antibiotic Resistance Genes. Published in Environmental pollution (Barking, Essex : 1987)

The ocean's dynamic regions, like the Kuroshio Extension, are hotspots for antibiotic resistance genes (ARGs). One site in the open ocean showed 90 times more ARGs than coastal areas, with multidrug resistance genes dominating. Unique bacteria such as Acinetobacter were found, carrying key resist...

05.08.2025 07:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Six new bacterial species isolated from the phycosphere of marine macroalgae: a joint analysis based on taxonomy and polysaccharide utilization loci. Published in Frontiers in microbiology

New marine bacteria ride along with seaweed, chowing down on tough sugars and playing big roles in carbon cycling! Six new species from Weihai, China, reveal unique traits in digesting algal sugars. One has a powerhouse enzyme set, while another skips some tools entirelyβ€”talk about specialization...

04.08.2025 19:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
A New Dimension in Tumor Heterogeneity: Intratumoral Bacteria Impact Multifocal Hepatocellular Carcinoma Development. Published in Cancer discovery

Tumors have their own microscopic ecosystems! In liver cancer, different microbes live in separate tumor lumps. Some bacteria team up with more aggressive cancer cells, helping them spread and hide from the immune system. This discovery highlights the role of these microbial communities in cancer...

04.08.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Ecological consequences of antimicrobial residues and bioactive chemicals on antimicrobial resistance in agroecosystems. Published in Journal of advanced research

The overuse of antibiotics and chemicals in farming has sped up antimicrobial resistance, affecting the environment and health. These substances mix into soils, changing microbial communities and increasing resistant genes. This not only risks ecosystem balance but also farming output. It's time...

04.08.2025 07:00 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Nitrate pollution accelerated the microbial corrosion of Fe0: A simulated corrosion verification for understanding marine corrosion phenomenological model. Published in Bioelectrochemistry (Amsterdam, Netherlands)

Adding nitrate to seawater can seriously speed up steel rusting! This study found that nitrate pollution isn't just about strong acids or bacteria that love sulfur. Instead, it shifts how microbes feed on nitrates, especially boosting Achromobacter. This change raises rust risk, making steel corr...

04.08.2025 07:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post-exploitation fate of alluvial goldmines in the Amazon: soil erosion, metal(loid) remobilisation and evolution of ecological functions during restoration. Published in The Science of the total environment

Gold mining in the Amazon is tough on nature, but French Guiana's rehab efforts offer some hope. Within four years, their strategies drastically cut loose soil particles and dangerous metals in rivers, making habitats a bit cleaner. However, while the land sees plant growth, the soil's ecology, l...

03.08.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Drug-resistant Escherichia coli metabolomics via pseudo-targeted SWATH/IDA-MRM: Bridging high coverage and precision. Published in Journal of advanced research

Unraveling the mystery of antibiotic resistance! New tech has boosted our ability to see how bacteria like E. coli change their metabolism to dodge drugs. This novel approach pinpoints over 3,500 metabolic features, revealing big shifts in energy and lipid processes. This could pave the way for n...

02.08.2025 19:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Do rhizosphere microbiomes match root functional traits? Published in Trends in ecology & evolution

Plants and soil microbes have been teaming up for millions of years. New research highlights how this partnership affects plant health. Roots influence which microbes hang around them, and those microbes, in turn, affect how roots function. Understanding this relationship could lead to better far...

02.08.2025 19:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Iron is an important influence of volcanic ash input on the evolution of deep-sea ecosystems. Published in Microbiology spectrum

Volcanic eruptions dump ash into the ocean, affecting life miles deep. This study reveals that iron from this ash shapes deep-sea microbes, with key genes playing a major role. Viruses aren't direct players in iron cycling but impact it through breaking down iron-processing microbes. These findin...

01.08.2025 19:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Directed evolution of Ξ±-ketoisovalerate decarboxylase for improved isobutanol and 3-methyl-1-butanol production in cyanobacteria. Published in Biotechnology for biofuels and bioproducts

Boosting the potential of algae to tackle climate change, scientists engineered a tiny bug that turns carbon into fuel! By tweaking an enzyme in cyanobacteria, they ramped up production of energy-rich alcohols by over 50%. This achievement marks a breakthrough in using biology to create sustainab...

01.08.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Metabolic responses and microbial community dynamics of denitrifying phosphorus removal sludge under nitrite stress using two types of volatile fatty acids. Published in Journal of environmental management

When tackling nitrite stress, enriched sludge systems showed unique strengths using sodium propionate or acetate. Propionate systems kept working better under low stress thanks to energy benefits, while acetate systems shone under high stress, quickly breaking down glycogen to fight nitrites. Mai...

01.08.2025 07:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Decoding past microbial life and antibiotic resistance in Δ°nonΓΌ Cave's archaeological soil. Published in PloS one

Ancient soil digs in Turkiye reveal a hidden past: from the Chalcolithic to Early Iron Age, soil samples show diverse bacteria and antibiotic-resistance genes. They've found antibiotic resistance stretching back to those ancient times, linked to human activity. This highlights how human impact is...

01.08.2025 01:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
The diverse phenotypic and mutational landscape induced by fluoroquinolone treatment. Published in mSystems

Antibiotic resistance isn't as straightforward as once thought. E. coli can develop resistance and tolerance to antibiotics in unexpected ways. Some mutants became highly tolerant but needed fewer antibiotics to be inhibitedβ€”a twist on what experts expected! These changes can happen without a cle...

31.07.2025 19:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Longitudinal study highlights patterns of Salmonella serovar co-occurrence and exclusion in commercial poultry production. Published in Frontiers in microbiology

Guess what? <i>Salmonella</i> isn't just one bad bugβ€”it's often a mix of many. In chicken farms, about 18% of samples had multiple types, with one, called Kentucky, being a bit of a bully, often keeping others out. While 17% of young chicken flocks had <i>Salmonella</i>, older ones hit 41%. Even...

31.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Stromatolites and pulsed oxygenation events in the Mesoproterozoic Longjiayuan formation of western Henan: evidence for life-environment co-evolution. Published in Scientific reports

Way back in Earth's history, low oxygen levels helped ancient structures called stromatolites thrive. In a specific region of China, these formations show diverse shapes and reveal how changes in oxygen and microbial life were linked. This study unveils essential clues about how early life evolve...

30.07.2025 13:00 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Biofilm Formation of Pseudomonas aeruginosa in Cystic Fibrosis: Mechanisms of Persistence, Adaptation, and Pathogenesis. Published in Microorganisms

Cystic fibrosis messes up mucus clearance in the lungs, leading to bacterial infections and lung damage. Pseudomonas aeruginosa is a tough bug thriving in CF lungs, using biofilms to shield against antibiotics. It adapts fast, hiding from the immune system and becoming hard to kill. Understanding...

30.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Adaptive Evolution of Sporosarcina pasteurii Enhances Saline-Alkali Resistance for High-Performance Concrete Crack Repair via MICP. Published in Microorganisms

Concrete cracks in seawater can be tough to fix due to extreme conditions, but scientists have evolved a bacteria, *Sporosarcina pasteurii*, to handle high salinity and alkalinity. This strain not only survives but thrives, boosting concrete strength significantly. They're uncovering the genetic...

30.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Microbial Food Safety and Antimicrobial Resistance in Foods: A Dual Threat to Public Health. Published in Microorganisms

Microbial food safety faces a huge threat as bacteria like Salmonella and E. coli become resistant to antibiotics. This review highlights how misuse in agriculture and healthcare is a big driver. New tech like CRISPR offers hope, but challenges remain, especially in low-income areas. Global colla...

30.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Integrated Characterization of Phoenix dactylifera L. Fruits and Their Fermented Products: Volatilome Evolution and Quality Parameters. Published in Molecules (Basel, Switzerland)

Dates are much more than a sweet treat! When transformed into juice, alcohol, or vinegar, dates reveal a rich array of aromas. A study found around 50 different compounds, showing off their sensory potential. Fermentation adds a zing with esters and acids. Vinegar especially stands out with high...

30.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Adaptive pangenomic remodeling in the Azolla cyanobiont amid a transient microbiome. Published in The ISME journal

Azolla ferns team up with a specialized bacteria, T. azollae, passing it down through generations. This partnership results in the bacteria losing genes it doesn’t need, like those for stress tolerance, while keeping critical ones for nitrogen fixation and photosynthesis. The study shows how inti...

29.07.2025 19:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Rice Wine Fermentation: Unveiling Key Factors Shaping Quality, Flavor, and Technological Evolution. Published in Foods (Basel, Switzerland)

Rice wine's taste and quality are shaped by how it's made and the ingredients used. The choice of raw materials and brewing techniques directly affects its flavor. As fermentation happens, microbes play a key role in flavor richness and stability. With new tech and research advances, there's pote...

29.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Tracing the Evolutionary Expansion of a Hyperdiverse Antimicrobial Peptide Gene Family in Mytilus spp.: The MyticalinDB Resource. Published in Genes

Scientists explored the fascinating world of myticalins, immune peptides in mussels that don't rely on common structures. By examining genomes of different mussel species, they cataloged 100 unique peptides in a new database, MyticalinDB. This study shows these peptides play a key role in mussel...

29.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Microbial Evolution in Allodapine Bees: Perspectives From Trophallactic, Socially Plastic Pollinators. Published in Evolutionary applications

Bees from the Allodapini tribe could unlock secrets about bee microbiomes. Unlike other bees, they may offer new angles on how group living and nutrient sharing within colonies influence their microbiomes. This might impact our understanding of pollination and crop health, as the study of their p...

29.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
A novel Toll-like receptor in Hyriopsis cumingii responds to Aeromonas veronii GL1 infection by the MyD88 signaling pathway. Published in Fish & shellfish immunology

A newly discovered gene, HcTLR4, gets super active when battling bacteria. Located mainly in gonads and hemocytes, HcTLR4 kicks immune genes into high gear, boosting defenses like antibacterial peptides after it senses threats. Silencing it dulls this response, while overexpressing parts of it in...

29.07.2025 07:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Advancing microbial risk assessment: perspectives from the evolution of detection technologies. Published in NPJ science of food

Keeping food safe is tricky with complex supply lines and a mix of microbes. New detection tech is stepping up to help. This paper dives into these cutting-edge methods, showing how they boost food safety checks and pointing out where future research could go. Exciting times ahead for safer meals!

29.07.2025 07:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Revisiting nitrogen assimilation strategies in the mammalian gut: lessons from Enterobacteriaceae as pathobiont models and a challenge to the limitation paradigm. Published in Archives of microbiology

Turns out, the gut's nitrogen needs might not be as critical as once thought! Studies on E. coli and K. pneumoniae suggest these bacteria don't always need to scavenge nitrogen. Instead, carbon and energy might be the real hurdles for growth. This challenges old views and urges a deeper dive into...

29.07.2025 01:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Microbial production of creatine using growth-coupled selection systems. Published in Metabolic engineering

Creating creatine just got a whole lot greener! By using engineered bacteria, scientists found a way to make this key energy booster without traditional chemical methods. The process overcame hurdles with clever tweaks and bacterial evolution, boosting production by 58%. This innovative approach...

28.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Advancements in understanding tumor-resident bacteria and their application in cancer therapy. Published in Military Medical Research

Intracellular bacteria in tumors might be a big deal! They can boost cancer spread, affect treatment success, and even mess with genes and immunity. Scientists are exploring how these microbes sneak into cancer cells and survive. They're also looking at new ways to target them, like engineered dr...

28.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Insight into the transformation of phosphorus in soil affected by microplastics: A review. Published in Environmental research

Microplastics are not just a problem for oceansβ€”they mess with soil too. They can slash phosphorus availability by up to 55.94%, disrupting essential nutrients. The effects depend on the type of particles, soil, and exposure time. Microplastics change how phosphorus moves, affecting soil health a...

28.07.2025 13:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

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