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Susan Johnston

@susanjohnston.bsky.social

Senior Lecturer at the University of Edinburgh. Quantitative genomics of meiotic recombination and immunity in ๐Ÿฆ๐ŸŸ๐Ÿฆ„๐ŸŒพ. Shy Glaswegian. Mum of two. Fluent in franglais.

1,503 Followers  |  815 Following  |  56 Posts  |  Joined: 10.10.2023
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Posts by Susan Johnston (@susanjohnston.bsky.social)

Are you a recombination researcher heading to #SMBE2026? Submit your abstract to our Symposium, organised by Marie Raynaud, Laurent Duret, and myself. We're excited to have Aurora Ruiz-Herrera from UAB Barcelona as our invited speaker.
๐Ÿงฌ๐Ÿฆ„๐Ÿฆ ๐ŸŒฟ๐Ÿ๐ŸŸ๐Ÿ„๐Ÿชฑ
@aruizherrera.bsky.social @duret-lbbe.bsky.social

09.12.2025 14:54 โ€” ๐Ÿ‘ 17    ๐Ÿ” 13    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

Joana, this is such shocking news. I am so sorry to hear this. David was such a lovely guy ๐Ÿ˜ข๐Ÿค

10.01.2026 15:20 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Nucleotide diversity is a poor predictor of short-term adaptive potential A capacity to adapt is essential for a population to avoid extinction in a changing world and is recognised as a global conservation priority. Adaptation requires additive (heritable) genetic variatio...

I'm excited to share that our preprint is now available on bioRxiv! Our study challenges the widespread use of molecular genetic diversity as a predictor adaptive potential, with important implications for how genetic data is used to inform conservation decisions.

www.biorxiv.org/content/10.6...

06.01.2026 08:26 โ€” ๐Ÿ‘ 54    ๐Ÿ” 30    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2

A must read for conservation geneticists on the utility (or not??) of using molecular diversity to predict adaptive potential ๐Ÿ‘‡๐Ÿป

06.01.2026 09:14 โ€” ๐Ÿ‘ 23    ๐Ÿ” 13    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Honored to be part of this exciting symposium at #SMBE2026! Huge thanks to Marie Raynaud, @duret-lbbe.bsky.social, and @susanjohnston.bsky.social for the invitation. Looking forward to sharing insights on recombination and evolution with such an amazing community. See you in Copenhagen!!!

17.12.2025 09:33 โ€” ๐Ÿ‘ 6    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

And here is the working link: jobs.helsinki.fi/job/Helsinki...

12.12.2025 15:07 โ€” ๐Ÿ‘ 9    ๐Ÿ” 12    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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๐Ÿ“ฃPlant Meiosis Meeting is back for its second editionโ€ผ๏ธ
Save the date: 9โ€“11 September 2026, Poznaล„, Poland๐ŸŒฑ

More details coming soon๐Ÿคฉ

06.12.2025 20:42 โ€” ๐Ÿ‘ 18    ๐Ÿ” 10    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

Congratulations @ebablab.bsky.social !

10.12.2025 14:43 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Danke Miriam, I truly ๐Ÿ’– sparrows now. It has defo been too long and we finally have some landscapes to compare!!

09.12.2025 22:58 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Thank you Luisa โค๏ธ it means a lot! I will try to spend ๐Ÿ’ถ๐Ÿฅฒ

09.12.2025 22:57 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Not possible without incredible peer support ๐Ÿฅฒ

09.12.2025 18:16 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Dziekuje Mateusz ๐Ÿ™ hope to see you soon!

09.12.2025 16:46 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Are you a recombination researcher heading to #SMBE2026? Submit your abstract to our Symposium, organised by Marie Raynaud, Laurent Duret, and myself. We're excited to have Aurora Ruiz-Herrera from UAB Barcelona as our invited speaker.
๐Ÿงฌ๐Ÿฆ„๐Ÿฆ ๐ŸŒฟ๐Ÿ๐ŸŸ๐Ÿ„๐Ÿชฑ
@aruizherrera.bsky.social @duret-lbbe.bsky.social

09.12.2025 14:54 โ€” ๐Ÿ‘ 17    ๐Ÿ” 13    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

Happy to not write another one of those for a while ๐Ÿ’€

09.12.2025 14:29 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

This was my second try after scoring a B in 2023! This journey was only possible with advice, examples, mentorship, feedback, and collaboration from many kind colleagues around the world. I am especially grateful to Henrik Jensen at NTNU and the sparrow project in Norway. Thank you so much ๐Ÿ™ 2/2

09.12.2025 12:14 โ€” ๐Ÿ‘ 12    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Female and male house sparrow perched on some wood. Photo by Peter S. Ranke.

Female and male house sparrow perched on some wood. Photo by Peter S. Ranke.

View of the Helgeland archipelago from the top of a mountain. Photo by Hamish Burnett.

View of the Helgeland archipelago from the top of a mountain. Photo by Hamish Burnett.

Happy to have been awarded an @erc.europa.eu grant RECOSEX to investigate molecular causes and evolutionary consequences of sex differences in recombination, using the wonderful Helgeland house sparrows as a model ๐Ÿงฌ๐Ÿฆ #ERCCoG 1/2

(Photos: Peter S. Ranke & Hamish Burnett)

09.12.2025 12:14 โ€” ๐Ÿ‘ 64    ๐Ÿ” 3    ๐Ÿ’ฌ 9    ๐Ÿ“Œ 0
Approach for population-wide single-pollen nuclei genotyping.

Approach for population-wide single-pollen nuclei genotyping.

Population-wide single-pollen nuclei genotyping in #rye ๐ŸŒพ

Christina Waesch, et al.

๐Ÿ“– nph.onlinelibrary.wiley.com/doi/10.1111/...

#PlantScience #genomics

04.11.2025 02:45 โ€” ๐Ÿ‘ 8    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

I โค๏ธ this - congratulations!! This is an amazing study (and a juicy puzzle to solve!!)

17.10.2025 13:20 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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A mosaic of modular variation at a single gene underpins convergent plumage coloration The reshuffling of genomic variation from multiple origins is an important contributor to phenotypic diversification, yet insights into the evolutionary trajectories of this combinatorial process and ...

1/9 New in @science.org www.science.org/doi/10.1126/science.ado8005
How does genetic architecture constrain evolutionary trajectories? To address this question, we inferred the genetic architecture of convergent plumage coloration and its evolutionary history in wheatears.

17.10.2025 05:50 โ€” ๐Ÿ‘ 103    ๐Ÿ” 53    ๐Ÿ’ฌ 5    ๐Ÿ“Œ 5

PhD OPPORTUNITY! ๐Ÿ”ฌ๐Ÿ”–

Still one more day to apply for our fully-funded PhD position in Norway!

Please share widely ๐Ÿ™

14.10.2025 15:30 โ€” ๐Ÿ‘ 6    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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A comprehensive analysis of Atlantic salmon gonad and pituitary transcriptomes identifies novel players in sexual maturation - BMC Genomics Sexual maturation is a key developmental process important for reproductive success. Understanding the molecular mechanisms behind variation in sexual maturation can provide insights into reproductive biology and how life history variation is encoded in the genome. Atlantic salmon (Salmo salar) has become an excellent sexual maturation research model due to its diversity of life history strategies and its ecological and economic importance. A major challenge has been the lack of a comprehensive transcriptional investigation of reproductive tissues that captures the dynamic transcriptional changes across individuals, tissues, and developmental stages. Long non-coding RNAs (lncRNAs) also play crucial roles in maturation, yet their functions in salmon maturation remain underexplored. In this study, we sequenced 98 transcriptomes and found substantial transcriptomic complexity in the gonad and pituitary tissues of Atlantic salmon. We identified transcripts corresponding to 2,364 putative newly characterized protein-coding genes and 4,421 putative long intergenic non-coding RNAs (lincRNAs), many with tissue-specific expression. Gene co-expression network analysis (WGCNA) revealed tissue-specific gene network modules, linked to GO terms including Wnt signaling in immature testis, lipid metabolism, and cilia assembly in mature testis, ribosome biogenesis and DNA repair in the ovary, and hormone activity in pituitary. We identified new copies of known genes, such as gh1, pou3f2, and ier5 associated with the regulation of gonadal and pituitary functions. Some lncRNAs and their nearest genes showed correlated expression within modules, suggesting potential regulatory roles. Candidate lincRNAs indicated cis-acting regulatory potential on genes like tnfrsf11b and fgl1, which are implicated in immune privilege during gonadal development and sperm quality control. Our study provides a comprehensive transcriptomic analysis of Atlantic salmon gonad and pituitary tissues, significantly improving the functional annotation of the Atlantic salmon genome. These findings reveal key regulatory pathways and novel molecular players involved in sexual maturation, particularly in the testis. Importantly, our study highlights the regulatory potential of lncRNAs in reproductive biology and maturation age variation, advancing our understanding of the molecular mechanisms governing sexual maturation. They further unlock future gene expression analyses and regulatory network reconstruction for dissecting the roles of lncRNAs in Atlantic salmon life history variation.

Surprise ๐Ÿค— So many uncharacterized transcripts in Atlantic salmon, including super interesting long non-coding RNAs!

Proud to share the 1st publication of Xindi Huang:

link.springer.com/article/10.1...

With @fishcongen.bsky.social

๐Ÿ–ฅ๏ธ๐Ÿงฌ๐Ÿฆ‘

26.09.2025 13:52 โ€” ๐Ÿ‘ 16    ๐Ÿ” 8    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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๐Ÿš€ Weโ€™re hiring a Postdoc!

Join our group in Poznan, Poland to study meiotic crossover recombination in plants ๐ŸŒฑ Highly motivated & enthusiastic candidates are welcome!
๐Ÿ“… Deadline: Nov 1, 2025

๐Ÿ”— ibmib.web.amu.edu.pl/wp-content/uploads/2025/09/Postdoc_position-2025-Ziolkowskis-Lab.pdf

27.09.2025 05:03 โ€” ๐Ÿ‘ 23    ๐Ÿ” 23    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

Now published in Cell! We found that ~15% of SNPs from divergent refs did not liftover as SNPs in the gray fox refโ€”half mapped to monomorphic sites, half failed to map. Co-authored with Matthew Genchev, @elliecat.bsky.social, and @jazlynmooney.bsky.social

www.sciencedirect.com/science/arti...

22.09.2025 17:41 โ€” ๐Ÿ‘ 55    ๐Ÿ” 28    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 4

I am removing microsatellites and QTL mapping from our lectures this year ๐Ÿฅบ๐Ÿชฆ

23.09.2025 12:05 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

microsats ๐Ÿฅฐ

23.09.2025 10:29 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Charlesworth & Charlesworth

21.09.2025 13:32 โ€” ๐Ÿ‘ 5    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

@needhibhalla.bsky.social ๐Ÿ’…๐Ÿ…

20.09.2025 11:44 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
squidSim: a flexible R package for structured and reproducible simulations in Ecology and Evolutionary Biology

Interested in simulating the kind of data that you might commonly find in evolutionary and ecological studies?

Then we have the R package for you - squidSim!!

Check our new preprint:
ecoevorxiv.org/repository/v...

15.09.2025 14:51 โ€” ๐Ÿ‘ 67    ๐Ÿ” 34    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 6

This looks really interesting Marta!

12.09.2025 16:45 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Legacy effects of religion, politics and war on urban evolutionary biology - Nature Cities Cities affect biological evolution, but traditionally researchers focus on the biophysical influence of urban environments. Instead, this Review explores how the social processes of religion, politics...

Thrilled to share our Perspective published in ๐˜•๐˜ข๐˜ต๐˜ถ๐˜ณ๐˜ฆ ๐˜Š๐˜ช๐˜ต๐˜ช๐˜ฆ๐˜ด: ๐—Ÿ๐—ฒ๐—ด๐—ฎ๐—ฐ๐˜† ๐—ฒ๐—ณ๐—ณ๐—ฒ๐—ฐ๐˜๐˜€ ๐—ผ๐—ณ ๐—ฟ๐—ฒ๐—น๐—ถ๐—ด๐—ถ๐—ผ๐—ป, #๐—ฝ๐—ผ๐—น๐—ถ๐˜๐—ถ๐—ฐ๐˜€ ๐—ฎ๐—ป๐—ฑ #๐˜„๐—ฎ๐—ฟ ๐—ผ๐—ป #๐˜‚๐—ฟ๐—ฏ๐—ฎ๐—ป ๐—ฒ๐˜ƒ๐—ผ๐—น๐˜‚๐˜๐—ถ๐—ผ๐—ป๐—ฎ๐—ฟ๐˜† ๐—ฏ๐—ถ๐—ผ๐—น๐—ผ๐—ด๐˜†.

It also elevates Eastern European perspectives - underrepresented in #urban #evolution narratives.

www.nature.com/articles/s44...

12.09.2025 11:46 โ€” ๐Ÿ‘ 19    ๐Ÿ” 9    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0