Try it and let us know how it goes!
30.09.2025 21:52 — 👍 0 🔁 0 💬 0 📌 0
If you want to integrate it in your own AF3 installation, check the 3 files which only need a slight modification (model.py, confidences.py and confidence_types.py):
github.com/Kuhlman-Lab/...
30.09.2025 21:52 — 👍 0 🔁 0 💬 1 📌 0
GitHub - Kuhlman-Lab/alphafold3: Kuhlman Lab Installation of AlphaFold3
Kuhlman Lab Installation of AlphaFold3. Contribute to Kuhlman-Lab/alphafold3 development by creating an account on GitHub.
We used the Kuhlman lab’s version of AF3, as this also makes the mmseqs2 server available for generating MSA (thank you Brian Kuhlman and Henry Dieckhaus):
github.com/Kuhlman-Lab/...
No flags required, actifptm is part of the output (also calculated between chains).
30.09.2025 21:52 — 👍 0 🔁 0 💬 1 📌 0
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