We recently published a review reflecting on challenges and opportunities in characterising cancer cell states and niches using spatial transcriptomics and integration with digital pathology, see full thread below. Thank you Molecular Oncology for the opportunity!
12.08.2025 17:54 — 👍 2 🔁 2 💬 0 📌 0
UCL – University College London
UCL is consistently ranked as one of the top ten universities in the world (QS World University Rankings 2010-2022) and is No.2 in the UK for research power (Research Excellence Framework 2021).
🚨 We’re hiring a Postdoc!
Join our osteosarcoma research project @mariasecrier.bsky.social @fionafreeman.bsky.social. Funded by @littleprincesses.bsky.social 🧬🧫
🔹Cellular & molecular biology
🔹Cool 3D models
📍 UCL Cancer Institute, London
🗓️ July 1
📎 bit.ly/4kBCPt3
🌐 More info: lnkd.in/eahvf7Tg
09.06.2025 22:18 — 👍 4 🔁 3 💬 0 📌 1
Want to uncover biologically meaningful patterns in spatial omics data? Check out our new method EnrichMap, details below. Work led by the brilliant @cenkcelik.bsky.social! #spatialomics #genesets
02.06.2025 12:30 — 👍 2 🔁 3 💬 0 📌 0
Job Details
Are you looking for a postdoc position in #SpatialBiology?
We're advertising roles in both mathematical method development and in spatial data analysis @ox.ac.uk in colorectal precancer spatial biology!
Method Development: tinyurl.com/4vcbdjcy 🧮
Data Interpretation: tinyurl.com/yzsp729s 🧪
14.04.2025 09:55 — 👍 12 🔁 7 💬 1 📌 2
In addition to the two #SpatialBiology posts in the thread below, we're now also advertising for a Research Software Engineer #RSE to help us take #MuSpAn to the next level - come and join us!
my.corehr.com/pls/uoxrecru...
#academic #jobs #softwaredeveloper #compsci
01.05.2025 14:15 — 👍 3 🔁 4 💬 0 📌 0
Attending #AACR2025 and interested in new ways of applying AI to make sense of single-cell and spatial omics data? Come hear me talk about our methods today at 5:15 pm in the "Accelerating Cancer Research with AI and Data Science Session" or connect with me afterwards.
25.04.2025 13:57 — 👍 2 🔁 1 💬 0 📌 1
Thank you for the invitation, it was a pleasure to discuss our recent work and I really enjoyed the stimulating ideas and feedback received! Looking forward to connecting further in the future.
27.02.2025 15:12 — 👍 1 🔁 0 💬 0 📌 0
Dear @guigau.bsky.social and co-authors. Please see our very similar paper (not cited in yours as far as I can see) published 2018. Our software is called Croco!!! A citation would be nice!!!
bmcbiol.biomedcentral.com/articles/10....
23.01.2025 11:07 — 👍 6 🔁 3 💬 1 📌 0
New insights into the role of p21 in lung cancer from the fantastic @alexisbarr.bsky.social!
02.01.2025 13:18 — 👍 4 🔁 1 💬 0 📌 0
Developed by my brilliant PhD student, Eloise Withnell, we use SpottedPy to explore EMT plasticity in breast primary tumours and uncover a hybrid, quasi-mesenchymal E/M state linked with immune evasion. #cancer #spatialtranscriptomics #EMT
02.12.2024 12:00 — 👍 3 🔁 1 💬 0 📌 0
Delighted to introduce our new spatial transcriptomics tool, SpottedPy, allowing the identification of tumour hotspots at different scales and the exploration of distances and overlap with tumour microenvironment niches: genomebiology.biomedcentral.com/articles/10....
02.12.2024 12:00 — 👍 64 🔁 9 💬 2 📌 0
As a member of @smbmathbiology.bsky.social (and podcast fan) I listen to all of these, best way to keep up with the #science and the #scientists in #MathBio other than those I usually obsess about #MathOnco #MathEvo
26.11.2024 20:24 — 👍 6 🔁 3 💬 0 📌 0
Evolutionary biologist interested in bacterial pathogens and genomes. Research Group Leader at UCL. Member of UCL Genetics Institute and UCL Centre for Biodiversity and Environment Research.
Bióloga do IB-USP 07 🇧🇷 PhD UCBerkeley 🇺🇸 now postdoc at GEE-UCL 🇬🇧
Evolutionary genomics 🧬 🌳 popgen, ARGs, balancing selection. Interested in teaching, conservation. https://profiles.ucl.ac.uk/92078-debora-yoshihara-caldeira-brandt/
Professor of Ancient Genomics and Evolution, GEE, University College London.
www.burbanolab.org
Postdoc @uwgenome 🐶
PhD Genetics @uarizona 🐱
BA Chemistry @brynmawrcollege 🦉
Population Genomics, Machine Learning, Cancer Evolution 🧬💻
📍Seattle, WA & Vancouver, BC
https://www.linkedin.com/in/linhnhtran/
Molecular (esp. DNA methylation) 🧬 ecology 🌱 & evolution 🐜🐟🐭🤸♀️, biostatistics 📊
UCL, London, UK https://profiles.ucl.ac.uk/99848-alice-balard
Evolutionary geneticist at University College London, Editor-in-Chief @JEvBio.bsky.social
Professor of Cancer Evolution. UCL Cancer Institute. Interested in cancer genomics, bioinformatics, and somatic evolution.
https://www.ucl.ac.uk/medical-sciences/divisions/cancer/our-research/cancer-genome-evolution
Human evolutionary and population genetics | post-doc in the Hellenthal group at UCL
https://hellenthal-group-ucl.github.io/hellenthal-group/
Junior Group Leader at the University of Oxford
Interested in brain cancer plasticity and therapy resistance
https://www.oncology.ox.ac.uk/team/lucy-brooks
www.brookslab.co.uk
UKRI Future Leaders Fellow and Group Leader in Microbial Genomics at UCL Genetics Institute @ugiatucl.bsky.social.
Reconstructing the evolution of us and our pathogens past, present and future using large-scale genomics.
https://www.ucl.ac.uk/~ucbpvan
UCL Genetics Institute (UGI) is a multi-faculty Centre dedicated to the analysis of Big Genetic Data based at University College London.
https://www.ucl.ac.uk/biosciences/gee/ucl-genetics-institute
Our goal is to understand how host niches, epi/genetics, aging, lifestyle and treatments influence residual cancer dormancy to detect, prevent and treat cancer relapse
https://montefioreeinstein.org/cancer/research/cdi
Postdoctoral Junior Leader at CNIO funded by LaCaixa | Cancer genomics, evolution & early detection | Heptathlete forever
Clinical Computational Oncology @DanaFarber @harvardmed @broadinstitute | Chief - Population Sciences | Prev.: @Stanford @UCLA @UCSF | Discl.: http://bit.ly/2kF9C7B
Cell cycle, mitosis, nuclear pores, ubiquitin, disease.
Group leader @igbmc.bsky.social, research director DR1 @cnrs.fr, Strasbourg, France.
Alumna @JagiellonskiUni.bsky.social @impvienna.bsky.social @ethz.ch
Hobby cook and occasional runner.
Research group leader @German Cancer Research Center, reconstructing human development and disease using cell fate engineering
Brain development postdoc in @CorinneHouart lab at KCL's
@dev_neuro and @TheCrick. Alumni of @WellcomeTrust PhD at @Cambridge_Uni and @uOttawa
