We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST!
Mikaela Koutrouli (@mkoutrouli.bsky.social) will wrap up a great year of meetings by giving an update on the state of scverse!
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
03.12.2025 15:47 — 👍 5 🔁 0 💬 0 📌 1
We wrapped up an inspiring week with a visit to NVIDIA headquarters right after the scverse conference. Huge thanks to the NVIDIA Healthcare team and @severin7.bsky.social for hosting us and for the great discussions on scaling single-cell analysis and accelerating open science ⚡️
26.11.2025 16:53 — 👍 10 🔁 4 💬 0 📌 0
BioContextAI: Biomedical Model Context Protocol servers for composable agentic systems.
For more information, check out their website: biocontext.ai and publication: nature.com/articles/s41...
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
24.11.2025 16:39 — 👍 1 🔁 0 💬 0 📌 0
We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST!
Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI!
More information and Zoom registration link in 🧵
24.11.2025 16:39 — 👍 2 🔁 1 💬 1 📌 0
Full house for our Bi[o]hub workshop on Day 3!
Communities aren’t just built, they are co-created.
Together, we’re shaping an open, connected world of all-things-single-cell research, where sharing tools and ideas drives discovery.
20.11.2025 00:34 — 👍 5 🔁 2 💬 0 📌 0
BioContextAI: Biomedical Model Context Protocol servers for composable agentic systems.
For more information, check out their website: biocontext.ai and publication: nature.com/articles/s41...
Zoom registration link for the meeting: lnkd.in/dZpbKKsY
19.11.2025 14:56 — 👍 1 🔁 0 💬 0 📌 0
We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST!
Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI!
More information and Zoom registration link in 🧵
19.11.2025 14:56 — 👍 4 🔁 1 💬 1 📌 1
We are proud to announce that we're partnering with @biocontext.ai (biocontext.ai), a new open-source initiative for building agentic systems in biomedical research. Learn more in our announcement: scverse.org/blog/2025-11...
11.11.2025 19:41 — 👍 3 🔁 0 💬 0 📌 0
Release notes
Version 1.12: 1.12.0rc1 2025-11-10: Breaking changes: Adopt the Scientific Python deprecation schedule: remove Python ≤3.11 support and officially add Python 3.13 and 3.14 support, require anndata≥...
We just released scanpy 1.12rc1 (scanpy.readthedocs.io/en/latest/re...)
Highlights:
- Dask support in `sc.get.aggregate` for pseudobatching + `highly_variable_genes(flavor='seurat_v3')`
- More functions allow specifying `layers` and `obsm`
- Turn off quirky behavior (new defaults for scanpy 2.0)
11.11.2025 10:55 — 👍 5 🔁 0 💬 0 📌 0
For more information, check out their documentation: sccellfie.readthedocs.io Meeting Zoom registration link: lnkd.in/dZpbKKsY
10.11.2025 15:16 — 👍 1 🔁 0 💬 0 📌 0
scCellFie is a computational framework that infers metabolic activities from both single-cell and spatial transcriptomic data, enabling large-scale, interpretable analyses across cell atlases.
10.11.2025 15:16 — 👍 0 🔁 1 💬 1 📌 0
We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST!
Eric Armingol will be presenting on scCellFie!
More information and Zoom registration link in 🧵
10.11.2025 15:16 — 👍 3 🔁 1 💬 1 📌 0
Excited to see a home for MCP servers in bioinformatics emerge! The community needs a central hub for developing MCP servers for key bioinfo tools. At @scverse.bsky.social we're contributing to this effort - can't wait to share what we're building
06.11.2025 19:28 — 👍 6 🔁 3 💬 0 📌 0
📅 November 17-19, 2025 at Stanford University, California
🏛️ Format: 2 days of main conference + 1 day of satellite workshops across the Bay Area
ℹ️ More info: scverse.org/conference2025
Register: buff.ly/18KAUfpSubmit
Abstract: buff.ly/5nboSpt
06.11.2025 15:58 — 👍 0 🔁 0 💬 0 📌 0
Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University will be talking about her work using machine learning to decode the tumour microenvironment!
06.11.2025 15:58 — 👍 0 🔁 0 💬 1 📌 0
Meet the keynote speakers for the 2025 scverse conference!
Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University
🧵
@elhamazizi.bsky.social
@columbiauniversity.bsky.social
#scverse #scverse2025 #machinelearning #genomics #cancerimmunology
06.11.2025 15:58 — 👍 4 🔁 3 💬 1 📌 0
Please note that remote attendance is available for the first two days of the conference (November 17th and 18th) only and does not include access to the workshops on the third day (November 19th), which are exclusively for in-person participants.
06.11.2025 04:14 — 👍 0 🔁 0 💬 0 📌 0
Scverse Conference 2025
From the foundational open-source software in the life sciences — to its large community coming together
We're pleased to announce that we are now offering online attendance via Zoom.
Remote attendance is available for 30 USD, and you can secure your spot by registering at www.eventbrite.com/e/scverse-co....
We hope to see you online at the conference!
06.11.2025 04:14 — 👍 4 🔁 0 💬 1 📌 2
For more information, check out their documentation: sccellfie.readthedocs.io
Meeting Zoom registration link: lnkd.in/dZpbKKsY
05.11.2025 16:39 — 👍 1 🔁 0 💬 0 📌 0
scCellFie is a computational framework that infers metabolic activities from both single-cell and spatial transcriptomic data, enabling large-scale, interpretable analyses across cell atlases.
05.11.2025 16:39 — 👍 0 🔁 0 💬 1 📌 0
We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST!
Eric Armingol will be presenting on scCellFie!
More information and Zoom registration link in 🧵
05.11.2025 16:39 — 👍 2 🔁 1 💬 1 📌 0
📅 November 17-19, 2025 at Stanford University, California
🏛️ Format: 2 days of main conference + 1 day of satellite workshops across the Bay Area
ℹ️ More info: lnkd.in/dPc6sMHf
Register: lnkd.in/dTRydMwj
04.11.2025 16:37 — 👍 0 🔁 0 💬 0 📌 0
Erika Alden DeBenedictis, Co-founder of The Align Foundation & CEO of Pioneer Labs, will be joining us to talk about how Align Foundation's data platform advances structural biology!
04.11.2025 16:37 — 👍 0 🔁 0 💬 1 📌 0
Meet the keynote speakers for the 2025 scverse conference!
Erika Alden DeBenedictis, Co-founder of The Align Foundation 🧵
@erika-alden.bsky.social
@alignbio.bsky.social
@pioneerlabs.bsky.social
#scverse #scverse2025 #StructuralBiology #Biotech #Stanford
04.11.2025 16:37 — 👍 3 🔁 1 💬 1 📌 0
scverse Conference 2025
📅 November 17-19, 2025 at Stanford University, California
🏛️ Format: 2 days of main conference + 1 day of satellite workshops across the Bay Area
ℹ️ More info: scverse.org/conference2025
Register: buff.ly/18KAUfp
30.10.2025 15:18 — 👍 0 🔁 0 💬 0 📌 0
John Marioni, Head of Computation at Genentech Research and Early Development and former head of EBI will be joining us to talk about his work interfacing AI and Drug Development!
30.10.2025 15:18 — 👍 0 🔁 0 💬 1 📌 0
Meet the keynote speakers for the 2025 scverse conference!
John Marioni, Head of Computation at Genentech Research and Early Development and former head of EBI
🧵
#scverse #scverse2025 #AI #DrugDevelopment #MachineLearning #ComputationalBiology #Biotech #Pharma #Genentech
30.10.2025 15:18 — 👍 4 🔁 1 💬 1 📌 0
📅 November 17-19, 2025 at Stanford University, California
🏛️ Format: 2 days of main conference + 1 day of satellite workshops across the Bay Area
ℹ️ More info: scverse.org/conference2025
28.10.2025 16:00 — 👍 0 🔁 0 💬 0 📌 0
Panos Roussos, Professor at Icahn School of Medicine at Mount Sinai and scverse Advisory Board member will talk about his lab's work using spatial and single cell data to model Interindividual Variability in the Brain!
28.10.2025 16:00 — 👍 0 🔁 0 💬 1 📌 0
Meet the keynote speakers for the 2025 scverse conference!
Panos Roussos, Professor at Icahn School of Medicine at Mount Sinai 🧵
@panosroussos.bsky.social
#scverse #scverse2025 #SingleCell #SpatialTranscriptomics #Conference #Keynote
28.10.2025 16:00 — 👍 1 🔁 0 💬 1 📌 0
