Alexander Mathis's Avatar

Alexander Mathis

@trackingskills.bsky.social

Hacker, Computational Neuroscience, ML beyond logistic regression, bear and muscle spindle aficionado. Passionate about open source. #deeplabcut and see https://mathislab.org for more.

2,071 Followers  |  204 Following  |  52 Posts  |  Joined: 30.07.2023
Posts Following

Posts by Alexander Mathis (@trackingskills.bsky.social)

If you work at the intersection of computational neuroscience and machine learning, consider applying for this postdoc position (January 2027 start date):
academicpositions.harvard.edu/postings/15868
An opportunity to work with a great group of people across Harvard, MIT, and UC Berkeley.

10.02.2026 19:36 β€” πŸ‘ 71    πŸ” 48    πŸ’¬ 3    πŸ“Œ 2
Post image

Why did consciousness evolve at all? A superb special issue of @royalsocietypublishing.org brings together experts across disciplines to explore the functions of consciousness and why it emerged in some species but not others. @tecumsehfitch.bsky.social royalsocietypublishing.org/rstb/issue/3...

08.02.2026 12:47 β€” πŸ‘ 134    πŸ” 51    πŸ’¬ 6    πŸ“Œ 3

Check our latest work to model the sensorimotor pathway of grasping in primates also advancing embodied AI www.biorxiv.org/content/10.6...

05.02.2026 09:56 β€” πŸ‘ 5    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
Preview
EPFL Life Sciences Early Independent Research Scholar (ELISIR) From exceptional PhD directly to independent group leader

EPFL ELISIR apps now open go.epfl.ch/ELISIR. Fantastic opportunity for young neuroscientists to start an independent lab right after PhD, just like @epfl-brainmind.bsky.social ELISIR group leaders @jamespriestley.bsky.social & @ashleymaynard.bsky.social. www.youtube.com/watch?v=qjPD... πŸ‘‰ April 1 26

14.01.2026 15:39 β€” πŸ‘ 4    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
Post image

Identifying individual wild animals is key for conservation. The lab of @epfl-brainmind.bsky.social professor Alexander Mathis @trackingskills.bsky.social uses AI and images of Alaskan brown bears to non-invasively identify individuals & their behavior across seasons & years doi.org/10.1016/j.cu...

26.01.2026 08:36 β€” πŸ‘ 7    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

This is just our second M&M review!

The first one in 2020 was on AI for behavior - and now we discuss advances for jointly modeling behavioral and neural data!! Here is the first www.sciencedirect.com/science/arti...

05.12.2025 15:13 β€” πŸ‘ 18    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

Es hat Freude bereitet (aka with pleasure)!

05.12.2025 15:09 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Preview
Joint modelling of brain and behaviour dynamics with artificial intelligence - Nature Reviews Neuroscience Artificial intelligence is rapidly advancing our mechanistic understanding of the shared structure between the brain and higher-order behaviours. In this Review, Mathis and Mathis synthesize state-of-...

Joint modelling of brain and behaviour dynamics with artificial intelligence β€” a Review by Mackenzie Weygandt Mathis & Alexander Mathis

@trackingactions.bsky.social @trackingskills.bsky.social

#neuroscience #neuroskyence

www.nature.com/articles/s41...

04.12.2025 09:29 β€” πŸ‘ 26    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
Gift of Peggy Guggenheim

Gift of Peggy Guggenheim

Oscar DomΓ­nguez, Nostalgia of Space, 1939
https://botfrens.com/collections/14377/contents/1134990

18.11.2025 07:36 β€” πŸ‘ 49    πŸ” 7    πŸ’¬ 0    πŸ“Œ 1

You can learn about the work at #sfn2025 on Wednesday afternoon www.abstractsonline.com/pp8/#!/21171...

16.11.2025 00:24 β€” πŸ‘ 6    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image Post image

Great talk by Alessandro Marin Vargas at the #salk motor systems symposium!! www.salk.edu/events/scien...

16.11.2025 00:19 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 1
Program Planner

#SfN2025 @deeplabcut.bsky.social 3 poster on Monday morning. Overall, DeepLabCut 3.0 provides an integrative suite of tools for project management, deep learning for animal pose, and integration with many tools such as #Cebra, DLC2action, kpt-Moseq, etc.
www.abstractsonline.com/pp8/#!/21171...

15.11.2025 14:21 β€” πŸ‘ 6    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0

If you’re at SfN, see the poster on DeepLabCut 3 where n Monday 8-12
Swing by to talk to @trackingactions.bsky.social and me this and about the DLC ecosystem!

15.11.2025 11:50 β€” πŸ‘ 24    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
Preview
How AI Is Changing Neuroscience Discovery AI is altering how scientists study the brain

AI tools like DeepLabCut and SuperAnimal are changing how scientists study movement, helping them understand how brain activity drives behavior.

Read more: bit.ly/4qnX7JF

@trackingactions.bsky.social @deeplabcut.bsky.social

01.11.2025 00:07 β€” πŸ‘ 24    πŸ” 9    πŸ’¬ 0    πŸ“Œ 1
SCENE Manager The Simons Collaboration on Ecological Neuroscience (SCENE): SCENE is an international consortium of 20 leading researchers in the fields of Computational, Systems and Cognitive Neuroscience, and

Want to help shape the SCENE collaboration?! Join us as an executive director: www.cam.ac.uk/jobs/scene-m...

13.11.2025 17:32 β€” πŸ‘ 9    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio

New faculty job opening at @zuckermanbrain.bsky.social @columbiauniversity.bsky.social
Come be our colleague!
Application deadline: November 22
apply.interfolio.com/176153

21.10.2025 15:29 β€” πŸ‘ 18    πŸ” 11    πŸ’¬ 1    πŸ“Œ 0
Post image

🧠 The Lipid #Brain Atlas is out now! If you think #lipids are boring and membranes are all the same, prepare to be surprised. Led by @lucafusarbassini.bsky.social with Giovanni D'Angelo's lab, we mapped membrane lipids in the mouse brain at high resolution.
www.biorxiv.org/cgi/content/...

16.10.2025 06:23 β€” πŸ‘ 283    πŸ” 110    πŸ’¬ 7    πŸ“Œ 11
Post image

Interested in doing a PhD in machine learning at the University of Edinburgh starting Sept 2026?

My group works on topics in vision, machine learning, and AI for climate.

For more information and details on how to get in touch, please check out my website:
homepages.inf.ed.ac.uk/omacaod

16.10.2025 09:15 β€” πŸ‘ 39    πŸ” 18    πŸ’¬ 2    πŸ“Œ 0

Winter is coming.

17.10.2025 08:58 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Video thumbnail

The team just picked up the latest data from the Swiss National Parc. Full of goodies - find out more about the first paper from the project: eceo-epfl.github.io/MammAlps/

17.10.2025 08:58 β€” πŸ‘ 83    πŸ” 15    πŸ’¬ 3    πŸ“Œ 2
Preview
An ion channel omnimodel for standardized biophysical neuron modelling Biophysical neuron modeling is an indispensable tool in neuroscience research, with the combination of diverse ion channel kinetics and morphologies being used to explain various single-neuron propert...

β€œMapping ion channel function” doi.org/10.7554/eLif... isn’t exactly a citation slayer, but it’s still one of my favourites (& my first independent project). Today we push pt 2, where we trace code origin & unite almost all channel models in a common expression. Boom! www.biorxiv.org/content/10.1...

06.10.2025 18:25 β€” πŸ‘ 48    πŸ” 16    πŸ’¬ 0    πŸ“Œ 3
Post image

Smuggler's Notchnin Jeffesonville Vermont

06.10.2025 11:08 β€” πŸ‘ 3416    πŸ” 358    πŸ’¬ 79    πŸ“Œ 18
Group photo in front of old church in green scenery

Group photo in front of old church in green scenery

The Neuroscience School for Advanced Studies "Brain Plasticity: Neural Basis of Individuality" led by LIP Director Ulman Lindenberger and Tobias Bonhoeffer @mpiforbi.bsky.social has just ended at San Servolo, Venice! #nsas

04.10.2025 07:50 β€” πŸ‘ 12    πŸ” 4    πŸ’¬ 1    πŸ“Œ 1
Video thumbnail

I get that the news cycle is packed right now, but I just heard from a colleague at the Smithsonian that this is fully a GIANT SQUID BEING EATEN BY A SPERM WHALE and it’s possibly the first ever confirmed video according to a friend at NOAA

10 YEAR OLD ME IS LOSING HER MIND (a thread 🧡)

24.09.2025 20:30 β€” πŸ‘ 29709    πŸ” 9984    πŸ’¬ 727    πŸ“Œ 1549
Larry Aldrich Foundation Fund

Larry Aldrich Foundation Fund

Miroslav Sutej, Bombardment of the Optic Nerve, II, 1963
https://botfrens.com/collections/14377/contents/1135340

25.09.2025 16:38 β€” πŸ‘ 93    πŸ” 22    πŸ’¬ 0    πŸ“Œ 1

This is one of my favourite things ever. From the awesome @kristorpjensen.bsky.social

24.09.2025 13:33 β€” πŸ‘ 44    πŸ” 7    πŸ’¬ 3    πŸ“Œ 0
Preview
Huntington's disease successfully treated for first time One of the most devastating diseases finally has a treatment that can slow its progression and transform lives, tearful doctors tell BBC.

www.bbc.com/news/article... science ftw! Amazing work described here.

24.09.2025 17:16 β€” πŸ‘ 9    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

Count me in too!

24.09.2025 18:34 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Absolutely, please note this is a dataset and machine learning benchmark article. The behavior study is coming!

24.09.2025 18:32 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

We’ll present the first benchmark at @neuripsconf.bsky.social β€” there is much more to come!

23.09.2025 07:18 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0