@qiime2.org.bsky.social
Plugin-based biological data science platform that ensures full bioinformatics reproducibility. Need help? https://forum.qiime2.org Ready to learn? https://use.qiime2.org Ready to develop? https://develop.qiime2.org
Image of crowded bookshelves.
A lot is changing with our documentation, including a transition from a single-source to multiple sources. Learn more in this News post on the forum: forum.qiime2.org/t/the-qiime-...
#qiime2 #bioinformatics #documentation #jupyterbook
I guess I’ll start off on here with my last tweet?
I’m pleased to share my new preprint with @betascience.bsky.social, where we introduce a new database for PICRUSt2 functional predictions.
www.biorxiv.org/content/10.1...
In a spot of happy news, our lab published a new method for kmer-based microbial diversity analysis! The @qiime2.org plugin q2-kmerizer is now out in @asm.org's mSystems 🎉
Check it out #MicroSky and 🖥️🧬 communities interested in #microbiome #bioinformatics:
doi.org/10.1128/msys...
For the QIIME 2 developers out there, here are the dependency version changes you can expect to see in the upcoming 2025.4 release - reach out if you need help updating your plugins!
forum.qiime2.org/t/qiime-2-20...
This announcement is a little late (we're just starting to use bluesky), but #QIIME 2 2024.10 was release this October! Lots of exciting new features with many more still on the way!
forum.qiime2.org/t/qiime-2-20...
#microbiome
#bioinformatics
#microbiomesky
Do you use Zenodo for archiving QIIME 2 data for publications? We now support loading QIIME 2 Results (Artifacts and Visualizations) directly from Zenodo with QIIME 2 View.
Check out the links in this Zenodo record, which references data from a new @cap-lab.bio pub:
doi.org/10.5281/zeno...
Happy Monday! Start your week off w/ a new QIIME 2 release: @qiime2 2024.2. There's a lot in this one, including new parallel actions in the shotgun distribution, a fancy new visualizer (summarize-plus), for summarizing feature tables & performance enhancements and minor fixes throughout. Enjoy!
19.02.2024 18:16 — 👍 0 🔁 1 💬 0 📌 0
Definitions of Reproducible, Replicable, Robust, and Generalizable in the context of data analysis.
QIIME 2 Provenance Replay auto-generates the code for creating QIIME 2 results from QIIME 2 results & builds "bioinformatics reproducibility supplements" for your papers. Our goal is to make it easy for you to perform reproducible, replicable & robust bioinformatics.
doi.org/10.1371/jour...
#QIIME2 2023.9 is now available! Exciting updates include an alpha release of our shotgun #metagenomics distribution, fully integrated provenance replay within the framework, batched decontam analysis, and more! Thank you contributors!!
forum.qiime2.org/t/qiime-2-20...