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Joe Weaver

@joeeweaver.bsky.social

Assistant Professor in Theoretical Biological (Microbiome) Modelling with the SMART Soils Lab at Durham University https://joeweaver.github.io/

94 Followers  |  109 Following  |  95 Posts  |  Joined: 30.08.2023  |  1.5848

Latest posts by joeeweaver.bsky.social on Bluesky

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a man wearing a music band shirt is holding a skateboard over his shoulder ALT: a man wearing a music band shirt is holding a skateboard over his shoulder
05.12.2025 13:03 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Conveying research goals clearly is important; there are common writing 'moves', exemplified here by Girlfriend (Lavigne, 2007).

I don't like your girlfriend: clearly state the problem

I think you need a new one: propose solution

I could be your girlfriend: describe your specific contribution

05.12.2025 07:37 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

@rorylcooper.bsky.social gave a very nice talk (with gorgeous art) on crocodilian head scale patterns. Fav finding was a potential simple explaination mechanisms driving scale diversity between species.

03.12.2025 15:05 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

One sad consequence of mobile and cordless phones: much harder to explain DNA supercoiling these days.

03.12.2025 14:17 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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A 3D‐printed optical microscope for low‐cost histological imaging 3D printing has become a useful tool for fast, reproducible and accessible manufacturing of optical components and microscope hardware, but often is only used to part-build imaging setups or specimen...

Holy cow, a completely 3D printed microscope, including lenses! (and that nearly a β€˜ oh, by the way’ part of @gailmcconnell.bsky.socialβ€˜s opening talk on all sorts of advances in microscopy)

onlinelibrary.wiley.com/doi/10.1111/...

03.12.2025 11:19 β€” πŸ‘ 6    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Settling into Durham University and attending the Biophysical Sciences Institute Winter ECR symposium. Had a peek at the posters, there is some amazing work going on at field intersections.

03.12.2025 10:04 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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a man in a suit and tie is smiling and looking at the camera . ALT: a man in a suit and tie is smiling and looking at the camera .
02.12.2025 16:27 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

An ORCID battle I choose to fight. ORC-ID, not "Orchid"

02.12.2025 14:19 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Reading some old notes from a project report, "tools need X implemented to fix this problem. Probably about a half a day of coding".

Oh the lies we tell ourselves.

27.11.2025 14:58 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

It's not *the* key to success, but on bit on that key is learning to consistently say to yourself "OK, I'll just work on <thing I've been avoiding but which should be my priority> for 5 minutes before I get tea."

2 hours later...

26.11.2025 13:35 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

What if I told you you're allowed to place your figures inline in your preprints?

25.11.2025 17:04 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Question for the meta-analysis and systemic lit review colleagues out there. How do you handle bodies of work coming from problematic publishers - straight up exclusion, evidence weighting?

21.11.2025 14:55 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
The 'oh my God Karen' meme from Mean Girls, except with the text 'Oh my God ScienceDirect. You can't just ask someone if they're a robot' underneath a screen capture of a science direct 'are you a robot?' captcha

The 'oh my God Karen' meme from Mean Girls, except with the text 'Oh my God ScienceDirect. You can't just ask someone if they're a robot' underneath a screen capture of a science direct 'are you a robot?' captcha

A productive use of my time:

17.09.2025 17:36 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

My test cases pass. Time for a coffee.

My test cases don't pass. Time for a coffee.

21.08.2025 14:11 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

May the typographers who make fonts with I and 1 indistinguishable and the people who select those fonts as appropriate for a journal have an unpleasant night.

Those who make ρ and p too similar, consider yourself on notice.

06.08.2025 20:36 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Soil - Durham University

I get to do the "I'm pleased to announce" thing!

Durham University has offered me the the position of Assistant Professor in Theoretical Biological (Microbiome) Modelling with the SMART soils lab to help create healthier soils across many environments and spanning multiple disciplines!

31.07.2025 12:27 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 2    πŸ“Œ 0

This is an indication of learning and progressing. You're doing great!

28.07.2025 12:53 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Even if your code is "messy". Even if it doesn't run fully. Making it easily available helps understanding the nitty gritty details that don't even get put into SI.

24.07.2025 20:51 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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a man is talking to another man with the words i know that feel breh above him . ALT: a man is talking to another man with the words i know that feel breh above him .
24.07.2025 19:19 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Gettin' REAL tired of bubble charts using diameter to indicate p-value when the chart ends up being panel Q of a 3x3 inch figure.

21.07.2025 10:39 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

In my current project, I'm tracking my lower and upper task estimates and qualitative 'uncertainty'. I've been tackling the uncertain tasks as soon as possible and updating the upper/lower bounds. It's very fun watching the overall project upper/lower ETA converge.

Did I just become a Bayesian?

17.06.2025 15:40 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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a man in a yellow shirt is sitting in a chair holding a cup and pointing ALT: a man in a yellow shirt is sitting in a chair holding a cup and pointing

Me when one of 'my' proteins shows up in Thobela's keynote and #MEWE11:

05.06.2025 14:02 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Kind of blown away that *98%* of U.S. deaths from waterborne illness are specifically from biofilm associated pathogens. #MEWE11

02.06.2025 22:06 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Every time I fly west. "Gosh is this what being a morning person is like? I hate* morning people."

* Am deeply envious of.

#MEWE11

02.06.2025 11:55 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Decades of flying and probably dozens of times through ATL. I think this may be the first time I've ever seen the outside of the airport. #MEWE11

02.06.2025 00:55 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

The reality is setting in, getting bags packed for #MEWE11

31.05.2025 14:38 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I saw a version of this talk at the Microbiology Society earlier this year. It was fascinating stuff!

28.05.2025 14:29 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Just me rewriting to remove em dashes in my proposal to avoid the latest generative AI witch hunt.

Keeping my 'moreovers' though.

28.05.2025 09:55 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Lots of writers I admire have advice which boils down to 'be consistent, don't wait until the mood hits you'.

I have had great success using the 'task inertia' of my personality. Not in the mood to write? OK, just set a timer and make an honest effort for 15 mins. An hour later...still writing.

22.05.2025 14:51 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

We'll also go over nuts and bolts stuff, like how to get in contact with our colleagues in middle and high schools (hint: talk to them early!), how to bridge the languages secondary and higher education, how to navigate ethics approval, and how to disseminate the lesson plans widely.

08.05.2025 09:48 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

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