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Benoit Bruneau

@benoitbruneau.bsky.social

Cardiac developmental biologist. Oakland and San Francisco. Hi friends! πŸ‡¨πŸ‡¦

5,701 Followers  |  2,048 Following  |  2,044 Posts  |  Joined: 31.07.2023
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Posts by Benoit Bruneau (@benoitbruneau.bsky.social)

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A minor league hockey team had a wiener dog race. Zero thoughts, just vibes and absolute chaos. A thing of beauty

03.03.2026 18:38 β€” πŸ‘ 3816    πŸ” 1202    πŸ’¬ 71    πŸ“Œ 157

Oh yeah let’s get HEALTHY!

04.03.2026 04:03 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Susur, King St Toronto.

04.03.2026 03:10 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

since these deletions are heterozygous de novo SV, dosage-sensitive organization of 3D chromatin is likely an important genomic mechanism for CHD and perhaps other developmental disorders. Comments welcome!

04.03.2026 00:54 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

RNAseq showed that many local heart development genes were affected by the deletions, one SV as small as 68bp. Other genes related to the etiology of the patients had changed expression. Overall, we propose that machine learning can be used to streamline the detection of SV pathogenicity, and 4/x

04.03.2026 00:53 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

SVs predicted to alter 3D chromatin were more often associated with CHD than controls. In our lab we engineered iPS cells to harbour 3 of these deletions, and Capture-HiC showed that the predictions were correct! Sorcery in my view! 3/x

04.03.2026 00:51 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

graduate student Maureen Pittman used a version of @gfudenberg.bsky.social's Akita, later re-trained on cardiac diffs from our lab (now called CardioAkita) to predict structural variants in the genomes of patients with congenital heart disease that would alter 3D chromatin organization 2/x

04.03.2026 00:48 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
jodilee539.bsky.social

latest preprint just dropped! From a fantastic collaboration between our lab and Katie Pollard's @gladstoneinst.bsky.social. @ucsanfrancisco.bsky.social graduate student Jodi Lee jodilee539.bsky.social and Gladstone postdoc Jingshing Wu led the project www.biorxiv.org/content/10.6... 1/x

04.03.2026 00:46 β€” πŸ‘ 19    πŸ” 6    πŸ’¬ 1    πŸ“Œ 0
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I am presenting our CODA platform in its glorious versatility tomorrow at the Kavli NDI Center at 9 am Clark Hall 316, Johns Hopkins University.

I will talk about CODA applications in oncology, neuroscience, developmental biology.

CODA maps whole organs and organisms at single-cell resolution.

03.03.2026 19:58 β€” πŸ‘ 12    πŸ” 3    πŸ’¬ 1    πŸ“Œ 1

β€œI will be too tired. I am going back to bed.”

Toad went back into the house.

03.03.2026 20:37 β€” πŸ‘ 316    πŸ” 72    πŸ’¬ 1    πŸ“Œ 10
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Yesterday was slow cooker butter chicken with rice vinegar pickled cubes. End result:

03.03.2026 19:08 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

"it's not political speech, thank you for your input though". We are free to attend these rallies at our place, even encouraged

03.03.2026 18:44 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

AAAAAAAAAAAAAAAAAAAAAAAHHHHHHHHH

03.03.2026 01:12 β€” πŸ‘ 33    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
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ANGEL CRISIS, by Zora Jones 6 track album

wow this new Zora Jones album is something else! zorajones.bandcamp.com/album/angel-...

03.03.2026 02:33 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Amaizeing

03.03.2026 01:12 β€” πŸ‘ 5    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Final week to apply!

PUMAS is designed specifically for community college students ready to gain hands-on research experience at Gladstone.

Don’t miss this opportunity to spend your summer in the lab learning from world-class scientists.

Apply now ➑️ https://bit.ly/2UVIaST

02.03.2026 21:29 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

aspirational

02.03.2026 20:27 β€” πŸ‘ 6    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Apply to become a Preprint Editor
Development

Apply to become a Preprint Editor Development

We are inviting experienced researchers to apply to become Preprint Editors, a new type of editorial role responsible for handling our 'In preprints' articles and forging links with preprint literature. #prepints

Learn more and apply before 30 March 2026:
journals.biologists.com/dev/pages/pr...

02.03.2026 14:55 β€” πŸ‘ 12    πŸ” 16    πŸ’¬ 0    πŸ“Œ 1

AAAHHHHHHHHH

02.03.2026 05:41 β€” πŸ‘ 28    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0
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a girl wearing a blue shirt with the number 30 on it ALT: a girl wearing a blue shirt with the number 30 on it
01.03.2026 22:59 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

didn't expect the slamming on the oven ceiling

01.03.2026 22:55 β€” πŸ‘ 4    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
The lawn chair knocked over meme. Green lawn, white chair and table, one is knocked over. Text β€œthe great Nebraska earthquake of 2026 we will rebuild”

The lawn chair knocked over meme. Green lawn, white chair and table, one is knocked over. Text β€œthe great Nebraska earthquake of 2026 we will rebuild”

We survived a 4.0+!

01.03.2026 22:38 β€” πŸ‘ 8    πŸ” 1    πŸ’¬ 0    πŸ“Œ 1
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Column | What science says we’ve been getting wrong about exercise Doctors and physiologists point to studies that show tiny, regular bursts of effort β€” like climbing a few stairs β€” can capture many of the benefits of the gym.

I like this article because my house has 65 steps, from driveway to bedroom. Fifty from home office to the top. Often I forget my keys upstairs... back up I go! So maybe that's all I need: live at home, forget stuff, up for dinner, down and back up after. www.washingtonpost.com/health/2026/...

01.03.2026 20:45 β€” πŸ‘ 8    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

This is brilliant

01.03.2026 19:38 β€” πŸ‘ 25    πŸ” 5    πŸ’¬ 1    πŸ“Œ 0
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That's right. Worse than Pointless
www.nytimes.com/2026/02/23/o...

01.03.2026 15:32 β€” πŸ‘ 1537    πŸ” 435    πŸ’¬ 40    πŸ“Œ 22

"a striking departure from usual...", "highly unusual...", "against usual norms", "going against tradition": can there be a harder set of terms to not gloss over illegal and amoral behaviour by certain individuals?

01.03.2026 19:39 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

explosion sounds around here. Anyone know what this is?

01.03.2026 05:00 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Sleepy owl found resting among items on a New York antique store shelf Shoppers in upstate New York month turned up a rare find while perusing a local antique store this month: a live owl resting peacefully among items on a shelf.

Who?

28.02.2026 22:25 β€” πŸ‘ 162    πŸ” 18    πŸ’¬ 5    πŸ“Œ 2
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While we sit around to find out how bad exactly it all is, a bit of cheer: the best baguette of Paris competition was won by a Sri Lankan who appears to have started as a dish washer in restaurants and eventually trained as a Boulanger.

www.paris.fr/pages/la-mei...

28.02.2026 21:49 β€” πŸ‘ 6323    πŸ” 934    πŸ’¬ 79    πŸ“Œ 60
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I already need a change of subjects from politics so here it is, Clingy Dogs.

Tony

28.02.2026 11:25 β€” πŸ‘ 42    πŸ” 11    πŸ’¬ 0    πŸ“Œ 2