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Sophie Abby

@soabby.bsky.social

Researcher at CNRS, TIMC lab, Grenoble France compBio@TrEE group https://tree-timc.github.io/compbio Archaea & Bacteria Evolution Comparative genomics and Phylogenomics Evolution of Cellular machineries & Metabolic pathways https://sophieabby.github.io

500 Followers  |  205 Following  |  17 Posts  |  Joined: 28.11.2023  |  1.8347

Latest posts by soabby.bsky.social on Bluesky

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Group Leader - Genome Biology Unit Are you ready to lead groundbreaking research in Genome Biology? Join us at EMBL! We are seeking a motivated scientist to lead an independent research group addressing exciting and original biological...

To all post-docs: The Genome Biology dept ‪@embl.org
has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

30.07.2025 13:41 — 👍 169    🔁 200    💬 0    📌 7
graphical abstract of the article the extended mobility of plasmids

graphical abstract of the article the extended mobility of plasmids

Here's our new broad review on the extended mobility of plasmids, about all mechanisms driving and limiting their transfer. From conjugation to conduction, phage-plasmids to hitchers, molecular to evolutionary dynamics, ecology to biotech. The state of affairs. 1/9 academic.oup.com/nar/article/...

23.07.2025 07:35 — 👍 184    🔁 92    💬 4    📌 9
Photo de groupe prise avec les participants et participantes à JOBIM 2025.

Photo de groupe prise avec les participants et participantes à JOBIM 2025.

👏 Ca y est, #JOBIM2025 est officiellement fini !

Au nom de toute l'équipe, merci pour votre participation, et pour toutes ces discussions scientifiques intenses et stimulantes.
Merci aussi pour votre enthousiasme, votre bienveillance et tous ces rires échangés pendant la conférence.

1/2 ⤵️

11.07.2025 19:31 — 👍 28    🔁 14    💬 1    📌 2
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‼️ Le programme détaillé des #JOBIM2025 est en ligne ‼️

📍Rendez-vous sur jobim2025.labri.fr/detailed_pro...

01.07.2025 18:38 — 👍 10    🔁 7    💬 0    📌 1
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After 5 amazing years @pilhoferlab.bsky.social I'm starting my lab @embl.org Grenoble this November embl.org/wollweber
We'll image Asgard archaea and many other strange microbes ( #archaeasky, #protistsonsky..) to understand eukaryogenesis
First job ad: #teamtomo scientist!🔬❄️ tinyurl.com/2rdu2ze6

27.06.2025 10:58 — 👍 157    🔁 45    💬 9    📌 5
Portail Emploi CNRS - Offre d'emploi - Ingénieur d'Étude en Bioinformatique des séquences (H/F)

Voici le lien correct pour candidater : emploi.cnrs.fr/Offres/CDD/U...

27.06.2025 19:37 — 👍 0    🔁 0    💬 0    📌 0
Home Organisation Selection Choose your home organization to authenticate

Nous recrutons un IE en bioinformatique pour faire de l'analyse évolutive de séquences biologiques (CDD de 22 mois) dans le cadre d'un projet ANR.

L'offre est disponible ici : emploi.cnrs.fr/Gestion/Offr...
N'hésitez pas à partager ! Merci ! 🙏
Me contacter pour toute info supplémentaire.

27.06.2025 07:11 — 👍 2    🔁 7    💬 1    📌 0
Programme synthétique de JOBIM2025

Programme synthétique de JOBIM2025

‼️Le #programme synthétique de @jobim2025.bsky.social est en ligne‼️

📍Rendez-vous sur jobim2025.labri.fr pour toutes informations concernant #JOBIM2025

26.06.2025 20:53 — 👍 6    🔁 6    💬 0    📌 1
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We are looking for new recommenders to join Peer Community in Genomics! The position of “recommender” is analogous to an associate editor at a traditional journal. However, recommenders are not obliged to handle any manuscripts.

12.06.2025 06:02 — 👍 1    🔁 3    💬 1    📌 1

Looking for a postdoc on bacterial-insect symbiosis, combining evolution and molecular mechanisms? I'll have one open in my lab starting Sept 2025. If interested contact me (or find me at the GRC on Animal-microbe symbiosis if you'll be there). #SymbioSky

29.05.2025 20:11 — 👍 33    🔁 36    💬 0    📌 1

NIH funding supporting the HMMER and Infernal software projects has been terminated. NIH states that our work, as well as all other federally funded research at Harvard, is of no benefit to the US.

22.05.2025 12:42 — 👍 287    🔁 232    💬 37    📌 46
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Our friends of atacamensis.cl have just published this short video about our fieldtrip to the Atacama Desert in March.

24.05.2025 18:24 — 👍 19    🔁 4    💬 0    📌 0
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Join the Blokesch lab (@EPFL) as a postdoc in Molecular Microbiology 🤩
Study Vibrio cholerae defense systems (phage/plasmid) in a dynamic, collaborative environment in Lausanne close to Lake Geneva in 🇨🇭!
Please visit my lab's webpage for details about the position and how to formally apply.

25.04.2025 16:15 — 👍 66    🔁 104    💬 2    📌 3
MCEB 2025 - Granada, Spain - Sciencesconf.org

The programme and list of abstracts of selected talks and posters for the upcoming MCEB 2025 in Granada, Spain are now available. Please check out the conference website: mceb2025.sciencesconf.org?lang=en

25.04.2025 09:14 — 👍 0    🔁 1    💬 0    📌 1
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Excited to announce the Molecular Biology of Archaea (MBoA) 2026!

Join us in Cambridge, UK, from 6–10 July 2026 for the only international meeting dedicated to Archaea.

18.04.2025 13:56 — 👍 69    🔁 36    💬 3    📌 1
GTDB - Genome Taxonomy Database The Genome Taxonomy Database (GTDB) is an initiative to establish a standardised microbial taxonomy based on genome phylogeny.

GTDB Release 10-RS226 (16th April 2025) has been published
gtdb.ecogenomic.org

17.04.2025 12:20 — 👍 34    🔁 20    💬 1    📌 0
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New postdoc position in our lab (2 y+): evolutionary genomics of integrons and MGEs with focus on vibrio-phage interactions. Great environment @pasteur.fr for science, career building. Super collaborators @celineloot.bsky.social @amazeld.bsky.social @fredoleroux.bsky.social 3 weeks to apply!

16.04.2025 07:14 — 👍 99    🔁 126    💬 2    📌 1
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Félicitations à @annechevallereau.bsky.social lauréate 2025 de la Fondation Schlumberger ! 🏆
Ses recherches sur les interactions entre bactéries pathogènes et bactériophages ouvrent la voie à de nouvelles thérapies contre les infections.

👋 @cnrs-rhoneauvergne.bsky.social

04.04.2025 05:00 — 👍 24    🔁 5    💬 5    📌 1

Bravo Anne ! 🥳

04.04.2025 08:27 — 👍 1    🔁 0    💬 0    📌 0

Phage satellites are now known to be very diverse, numerous and ancient. They pose many evolutionary, ecological and mechanistic questions. Lots of fun in perspective!
Great pleasure to write this review to show it, with @jrpenades.bsky.social @dbikard.bsky.social Kim Seed & John Chen.

27.03.2025 18:45 — 👍 87    🔁 55    💬 1    📌 2
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Interested in knowing more about data-sharing, code-sharing, and software reporting quality in ecology? Do journal policies even matter?

We have now updated our #preprint after a wonderful round of reviews at @peercommunityin.bsky.social

📰 doi.org/10.32942/X21...

💻 github.com/ASanchez-Toj...

26.03.2025 05:39 — 👍 36    🔁 19    💬 3    📌 1
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PCI Webinar Series - Peer Community In The PCI webinar series is a series of seminars on research practices, publication practices, evaluation, scientific integrity, meta-research, organised by Peer Community In

Our 10th PCI webinar is happening TOMORROW (March 20, 2025, at 4 PM CET)🤩 !! We are thrilled to hear Sabina Leonelli's talk on "When Open Publishing Is Not Equitable." For more information and to sign up, visit:

19.03.2025 08:12 — 👍 2    🔁 5    💬 0    📌 0
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Please repost: Postdoc position in antibiotic discovery in a large multidisciplinary project combining high-throughput approaches, microscopy, AI, and hit-to-lead optimization at @umontreal.ca and @mila-quebec.bsky.social. Apply to ML.Antibiotics@gmail.com. See
lnkd.in/dVVk4N3s. #microsky

12.03.2025 12:35 — 👍 80    🔁 113    💬 1    📌 0

Phyloformer is finally published in MBE! 🎉

academic.oup.com/mbe/advance-...

The thread below provides a summary of our neural network for likelihood-free phylogenetic reconstruction.

12.03.2025 11:49 — 👍 15    🔁 11    💬 0    📌 1
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#Communiqué 🗞️ Le CNRS exprime sa solidarité avec les scientifiques exerçant aux États-Unis, où la liberté académique est aujourd'hui mise à l’épreuve.

👉 www.cnrs.fr/fr/presse/le...

06.03.2025 14:51 — 👍 792    🔁 352    💬 5    📌 19

Stand up for science Lyon / Grand Est :

*Lyon*
16h00 – Rassemblement place des Terreaux.

*Nancy*
10h00 – Débats. Amphithéâtre de la présidence Léopold, 34 cours Léopold, Nancy.
12-30-13h30 – ronde des obstiné·e·s.
Place Stanislas, Nancy.

06.03.2025 07:58 — 👍 9    🔁 8    💬 0    📌 2

👀 Fencing 🤺 with a microbe 🦠 -- Cool paper from the @basler-lab.bsky.social and Lim labs!

06.03.2025 12:23 — 👍 7    🔁 1    💬 0    📌 0

Juste un petit rappel au cas où ... mais la deadline des #soumissions pour #JOBIM2025 c'est dans quelques jours ... ⏲️ Ce serait dommage de la louper 😃 On a hâte de voir les travaux de la communauté 🤓

04.03.2025 17:02 — 👍 2    🔁 4    💬 0    📌 1

On recrute un-e bioinformatien-ne permanent-e dans l'équipe pour renforcer notre service d'analyse !

🏡 Nous faisons partie de l'unité de recherche @inrae-maiage.bsky.social en Île-de-France.

N'hésitez pas à me contacter ou @vloux.bsky.social si vous êtes intéressé-e

18.02.2025 11:40 — 👍 2    🔁 8    💬 0    📌 0

Prokaryotic genome enthusiasts, don’t forget to register for this excellent meeting

13.02.2025 20:05 — 👍 6    🔁 5    💬 0    📌 1

@soabby is following 20 prominent accounts