Christoph Elfmann

For what it's worth, it's now supported (since a couple of months ago)!

30.07.2025 12:54 — 👍 1    🔁 0    💬 0    📌 0

I'm participating the ISMB/ECCB 2025 conference, join me! Register now

I'm presenting #ISMBECCB2025 in Liverpool, United Kingdom from July 20-24. Who else is going? Register here and don't miss it! invt.io/1bxb9bltizy

03.07.2025 15:14 — 👍 1    🔁 0    💬 0    📌 0

SubtiWiki

Some of our servers are currently having issues with their HTTPS certificates. Please use HTTP URLs like subtiwiki.uni-goettingen.de and pae-viewer.uni-goettingen.de as a workaround for now!

05.05.2025 08:50 — 👍 0    🔁 0    💬 0    📌 0

Screenshot of a gene page on SubtiWiki showcasing the new BlueSky feed in the sidebar.

We now have a #BlueSky hashtag feed on SubtiWiki!

Just add the hashtag #subtiwiki to your post and it will appear in the sidebar of gene / metabolite pages!

04.02.2025 12:40 — 👍 3    🔁 1    💬 0    📌 1

PAE Viewer

Finally fixed some issues with PTMs for the PAE Viewer! Instead of the per-atom PAE which #AlphaFold outputs for modified amino acids, the average per-residue PAE is now displayed. subtiwiki.uni-goettingen.de/v4/paeViewer...

31.01.2025 15:40 — 👍 8    🔁 1    💬 0    📌 0

@imprsgs.bsky.social @unigoettingen.bsky.social

31.01.2025 14:22 — 👍 0    🔁 0    💬 0    📌 0

And of course many thanks to Cameron Gilchrist and Woosub Kim for their work on the search server and on Foldseek-Multimer, respectively, which was used in our implementation!

27.01.2025 17:53 — 👍 1    🔁 0    💬 0    📌 0

Foldseek Search Server Foldseek Server offers fast and sensitive protein structure alignments against large protein structure collections

Thanks a lot to Michel van Kempen, Stephanie Kim, Charlotte Tumescheit, the Soeding Lab, @martinsteinegger.bsky.social for the development of Foldseek! Also check out the fantastic search.foldseek.com by @milot.bsky.social, which we used as a blueprint. It boosts more options and better evaluation!

27.01.2025 17:39 — 👍 3    🔁 0    💬 1    📌 0

A screenshot of the results table of a Foldseek search on SubtiWiki. It shows multiple entries and corresponding metrics. One of the rows is expanded, revealing a 3D visualization of a superimposition of the target and the query structure corresponding to the search hit.

Try out our integration of the amazing protein structure search tool #Foldseek on #SubtiWiki (subtiwiki.uni-goettingen.de/foldseek)! Just upload a structure or use PDB/AlphaFoldDB entries to find similar structures. #IMPRS-GS #UniGoettingen
#alphafold #bacillus #subtilis

27.01.2025 17:29 — 👍 21    🔁 8    💬 3    📌 0