The Palaeoverse Community

Come and join us in 40 mins to hear from Dr Tyler! 🤩

📢 rphylopic 📦 1.6.0 is now on #CRAN!

- resolve_phylopic() retries failing API calls 🔄
- geom_phylopic()/add_phylopic() work with ggplot2 4.0.0 🪛
- add_phylopic_tree() wraps add_phylopic() for base R trees 🪾
- get_phylopic() can get og source files from #PhyloPic 👤

rphylopic.palaeoverse.org
#Rstats

Open Palaeontology (open access journal) Managing Editor job advert

Open Palaeontology (open access journal) Steering Committee job advert

*Gain skills and training in journal publishing!* Open Palaeontology is looking for Managing Editors and Steering Committee members! Please consider helping to shape community open-access publishing in palaeontology, and spread the word!
openpalaeo.org
@openpalaeo.bsky.social

Flow diagram illustrating the workflow for the ppgm R package. It starts with an extant envelope, fossil data is added, the evolution of climate niche is modelled, and finally climate niche & palaeoclimate are matched to show potential range.

ppgm: an R package for integrating neontological, palaeontological & climate data in a phylogenetic comparative framework onlinelibrary.wiley.com/doi/10.1111/... #SVP2025 @alexh-palaeo.bsky.social @datadryad.bsky.social @tamueccb.bsky.social

Some good representation from the @palaeoverse.bsky.social team at #2025svp! If you have any queries about what we do, come find us! 😊 @joeflansan.bsky.social
@macroecoevoale.bsky.social
@piginatutu.bsky.social
Some flyers still left at the @graphicssci.bsky.social booth too! 🎨

A flyer for the next instalment of the Palaeoverse Lecture Series, featuring a yellow cartoon trilobite following a trail of small cubes. There is also a picture of Dr Tyler, wearing a teal and black scarf and smiling into the camera.

🚨Palaeoverse Lecture Series🚨
🗓️20th November 2025, 15:00 UTC🗓️

Join us next week to hear from Dr Carrie Tyler from University of Nevada, Las Vegas, on “The high fidelity of trophic structure in ancient marine ecosystems: from functional diversity to food webs” 🎣

Register here: bit.ly/palaeoverse-...

💡 Need support to attend your next palaeontology event?
Apply for a PalAss Diversity Bursary! 🌍✨

👉 palass.org/palaeontolog...

💷 Funding available: up to £250 GBP per individual bursary.

📝 What you’ll need:
A short supporting statement
A breakdown of your anticipated expenses [1/2]

Want to do a PhD linking palaeontology, ecological modelling and polar ecosystems? Look no further than this NERC GW4+ DLTP funded project with @rowanwhittlebas.bsky.social at @bas.ac.uk & @bristolpalaeo.bsky.social and others (inc me).

www.bristol.ac.uk/media-librar...

🎓 Member News! 🌟

We’re excited to announce a brand-new series of Early-Career Researcher webinars all about careers and grants 💼💡

Our ERC Officer will be joined by inspiring grant awardees and professionals from diverse career paths who’ll share their experiences, tips, [1/2]

🦕 Thinking about a career in Palaeosciences? 🌍
Explore a list of Masters Courses and take the next step toward uncovering Earth's ancient secrets! 🔍✨

If you coordinate a Masters course that you’d like to see listed, need to update existing information,[1/2]

Interested in corals, dispersal, and diversification dynamics? 🪸

We're offering a PhD project on how the Tethys closure shaped global marine biodiversity — supervised by me, Bridget Wade, Nadia Santodomingo, & Francesca Bosellini.

🗓️ Apply by 17th December 2025

www.trees-dla.ac.uk/projects/how...

Integrative biodiversity discovery | Natural History Museum An introduction to field collection, laboratory analysis and phylogenomics.

New @nhm-london.bsky.social 5-day course on integrative biodiversity discovery! Learn how to collect specimens, obtain genomic data, and interpret biodiversity using cutting edge phylogenomic analysis. It's free, and aimed at early career researchers: www.nhm.ac.uk/our-science/...

Join us later today for Dr Hagen’s talk! An additional reminder, double-check the time if your clocks have recently changed (this will be at 4pm CET) 🕰️

🚨Registration open!🚨

Join us for the 4th Early Career Researcher Symposium of the International Fossil Coral and Reef Society (it’s online and free!) 🪸

📆 13th November 2025
⏰ 09:00–16:00 UTC
🔗 Register: fau.zoom-x.de/meeting/regi...

Last week the @palaeoverse.bsky.social team published our new paper outlining steps for cleaning palaeobiological occurrence data. I'm really proud of this one; we even have a step-by-step run-through of data cleaning and an accompanying vignette. Thanks to the fantastic team! ⭐

YouTube video by useR! Conference paleopal: A Shiny app for building data science workflows in paleontology - William Gearty

I've had such a great time talking about some of my recent #opensource and #openscience work at #useR2025, #USRSE25, and #GSAConnects2025 over the last few months!

If you missed it, you can watch the recording of my #useR2025 talk on YouTube.

#reproducibility #paleontology #datascience #Rstats

Series of plots and graphs illustrating the five different evolution model configurations studied. They correspond to a range of simple to (moving down the page) increasingly complex and parameter-rich models of morphological evolution.

Assessing the impact of character evolution models on phylogenetic and macroevolutionary inferences from fossil data onlinelibrary.wiley.com/doi/10.1111/... @daveyfwright.bsky.social @datadryad.bsky.social

Reposting this today to give it some more attention. Working on this paper with other @palaeoverse.bsky.social folks was a great experience 😄. Hopefully this will serve as a great resource for paleontologists in the future!

It even comes with R code that you can copy/paste: tenrules.palaeoverse.org

Graphic summary of the proposed ten rules and steps to follow when cleaning occurrence data for palaeobiological analysis. The rules are grouped within their respective theme: project setup (Rules 1–3; blue); data exploration and cleaning (Rules 4–8; red); and reporting and archiving (Rules 9 and 10; green).

Ten simple rules to follow when cleaning occurrence data in palaeobiology onlinelibrary.wiley.com/doi/10.1111/... @lewisajones.bsky.social @es-ucl.bsky.social @paleodb.bsky.social #FossilFriday

Ten simple rules to follow when cleaning occurrence data in palaeobiology Large datasets of fossil occurrences, often downloaded from online community-maintained databases, are a vital resource for understanding broad-scale evolutionary patterns, such as how biodiversity h...

Just in time for #FossilFriday! Our paper is out today in Palaeontology @thepalass.bsky.social

Ten simple rules to follow when cleaning occurrence data in palaeobiology 🧹🦕

onlinelibrary.wiley.com/doi/10.1111/...

Another great @palaeoverse.bsky.social team effort to offer a community resource!

Ten simple rules to follow when cleaning occurrence data in palaeobiology Large datasets of fossil occurrences, often downloaded from online community-maintained databases, are a vital resource for understanding broad-scale evolutionary patterns, such as how biodiversity h...

Happy #FossilFriday! Interested in fossil data handling & building analysis-ready databases? New paper out today in Palaeontology @thepalass.bsky.social with @palaeoverse.bsky.social team led by @lewisajones.bsky.social onlinelibrary.wiley.com/doi/10.1111/...
Hope it helps! 💻📊📈🦐🦪🦣🐚🪸🦕🦖🐋🐊🐟🦑🐢🐍🦎🐦‍⬛🦂

A schematic showing “Ten simple rules to follow when cleaning occurrence data im palaeobiology”, each illustrated with a cartoon and arranged around three key processes, in circles. The first stage is Project setup. Here we have: 1. Choose the right data for your question, with a cartoon of an arrow in a bullseye 2. Keep raw data raw, with a cartoon of a hand next to a small ‘no entry’ sign 3. Document your workflow, next to a cartoon of two stacked papers with writing on The second stage is Data exploration & cleaning, which can be performed iteratively: 4. Explore your data, with a cartoon of a magnifying glass over a normal distribution 5. Identify and handle incomplete data records, with a cartoon showing four squares in a larger square, all filled except the one in the bottom right, which is outlined 6. Identify and handle outliers, with a cartoon showing four squares in a larger square, where the one in the bottom right is larger and extends beyond the others 7. Identify and handle inconsistencies, with a cartoon showing three squares in a larger square, with the bottom right quadrant instead featuring a triangle 8. Identify and handle duplicates, with a cartoon showing an opaque square stacked over a transparent (edge only) square The final stage is Reporting and archiving: 9. Report your data and cleaning efforts, with a cartoon of a loudspeaker 10. Deposit your data and workflow, with a cartoon of a safe

🎉 This #FossilFriday we’re happy to share our new paper! 🎉

We take readers through 10 key steps for cleaning palaeontological data ready for computational analyses 🦕🧽

There’s also an R vignette showing you how to put these steps into practice! 💻

Check it out: doi.org/10.1111/pala...

Currently looking for a postdoctoral position and interested in this kind of research? 👀
Dr Hagen currently has an open position in his new Computational Integrative Biodiversity group at Goethe University Frankfurt, for more details see: www.uni-frankfurt.de/48794987/Zen...

A flyer for the next instalment of the Palaeoverse Lecture Series. The flyer features a cartoon landscape with a river and trees, overlying a grid showing how the system might be simulated across space. There is also a picture of Dr Oskar Hagen, wearing a white shirt and navy suit jacket, smiling into the camera.

🚨Palaeoverse Lecture Series🚨
🗓️30th October 2025, 15:00 UTC🗓️

Join us next week to hear from Dr Oskar Hagen, on “Mechanistic biodiversity modelling with gen3sis: population-based simulations across regional and global domains to deep and shallow time” 🌐

Register here: bit.ly/palaeoverse-...

Image shows a poster for the 'Lunchbox Models' seminar series. It shows a sandwich illustration between green boxes with information regarding the seminar series. The left column has general information and the right side has the schedule for the first 11 talks. All the info can be found on the webpage of the seminar series (linked in posting text and QR Code in poster). Several other food item illustrations are used as decoration, e.g. onigiri, coffee/tea cups, and pasta on a fork.

Announcing 🍱 Lunchbox Models 🍱
– an online seminar series all about ecological modelling & career insights, hosted by the @gfoesoc.bsky.social AKs Computational Ecology and YoMos 🦊

Find the topics and details as well as access to Zoom on our webpage: www.yomos.org/lunchbox-mod...

Please share!

🎓 Member News! 🌟

We’re excited to announce a brand-new series of Early-Career Researcher (ECR) webinars all about careers and grants 💼💡

Our ERC Officer will be joined by inspiring grant awardees and professionals from diverse career paths who’ll share their experiences, tips, [1/3]

An historic illustration of of two brown stripy butterflies and a caterpillar on a plant with white flowers.

🌱 Help secure the future of the Biodiversity Heritage Library! 🙏
Your donation will keep biodiversity knowledge open, connected, and growing, and fund the dedicated staff who make it all possible. 📖 👩‍💻 🌱 🌏 🧪
🔗 Donate: ancrywkv.donorsupport.co/page/BHLDona...
#BHLTransition #ILoveBHL

Loss of macroevolutionary species fitness explains the rise and fall of clades - Nature Ecology & Evolution The interplay between speciation and extinction rates shapes clade diversity dynamics. Using a novel phylogenetic model that includes living and fossil lineages, the authors estimate speciation and ex...

Excited to share our new paper where we find that the rise, decline and fall of clades is not explained by the usual suspects (diversity-dependence, ecological opportunities) but rather by species' insidious loss of macroevolutionary fitness: www.nature.com/articles/s41... 1/3

SORTEE The Society for Open, Reliable, and Transparent Ecology and Evolutionary Biology (SORTEE) is a service organization which brings together researchers working to improve reliability and transparency…

#SORTEE2025 Conference is over but you can (re)watch @ www.youtube.com/@SORTEcoEvo/...
- Introductory & closing remarks by @eivimeycook.bsky.social
- Plenary 1 by Dr. Israel Borokini
- Plenary 2 by Prof. Simine Vazire

The cover of the Cleaning Biodiversity Data in R book. It has an illustration of an Pacific Cleaner Shrimp in the middle of a navy background. The shrimp has a bright red-orange shell, pale-yellow body and white whiskers.

Still want to make cleaning biodiversity data shrimp-ler? 🦐

Good news: We just updated our Cleaning Biodiversity Data in R book, so you still can! We've updated data for 2025, added new content & fixed lots of silly typos 😀

Live the shrimp-le life:
cleaning-data-r.ala.org.au

#rstats #ecology 🧪🌏