Some new functionality for the Library of Identification Resources
https://doi.org/10.59350/c87y0-72m49
@larsgw.mastodon.social.ap.brid.gy
Studying ecology, biodiversity, taxonomy. PhD candidate @Radboud_uni. Interested in bibliographic data (@citationjs), digital humanities (#CDLI), statistics. [bridged from https://mastodon.social/@larsgw on the fediverse by https://fed.brid.gy/ ]
Some new functionality for the Library of Identification Resources
https://doi.org/10.59350/c87y0-72m49
Turns out there was a bug in the ragg renderer in R that replaces the text "Fe" with "Sr" (or vice versa) for certain font sizes (and probably specific fonts). How does that happen?
https://github.com/r-lib/ragg/issues/193
#rstudio #ggplot
new blog: "20 years of blogging" https://chem-bla-ics.linkedchemistry.info/2025/10/15/20-years-of-blogging.html https://doi.org/10.59350/v9c2y-4f248
"Today, exactly 20 years ago I started this blog. Two years ago I decided to upgrade my blog to one with version control. A decision I am still [β¦]
One of my first open sources projects, Citation.js (@citationjs), turns 10 years old today!
https://larsgw.blogspot.com/2025/09/10-years-of-citationjs.html
Graph of the occurrence of the words "vergiftig" (teal line) and "giftig" (orange line) from 1500 to present time. "giftig" is consistently used as much or more than "vergiftig", except from ca. 1939β1944.
Ik wilde zeggen, Google Ngram Viewer heeft helaas geen corpus voor Nederlandse woorden, maar #DBNL wel! Lijkt erop dat "giftig" over het algemeen al een lange tijd meer werd gebruikt dan "vergiftig".
https://www.dbnl.org/ngram-viewer/
De eerste paar edities van Heukels' Flora schrijven "Vergiftig!" (als zelfst. naamwoord) in plaats van gewoon "Giftig!", iemand enig idee of dat toen meer gangbaar was? Of lag het meer aan de schrijver, welk van de twee werd gebruikt?
#nederlands #taal #planten
@egonw @Radboud_uni It's "opt-out" but "opting out" just greys out the icon, it's still there. It's a joke.
16.09.2025 18:20 β π 0 π 0 π¬ 0 π 0@fasterthanlime RE: the unresponsiveness of npm, I noticed that there's not really a way of reporting *failed* phishing attempts mentioned on the site either.
08.09.2025 17:16 β π 0 π 0 π¬ 0 π 0The 'color' npm package has been compromised: https://fasterthanli.me/articles/color-npm-package-compromised
08.09.2025 17:00 β π 2 π 11 π¬ 2 π 0@fasterthanlime I think I got the same 2FA phishing email!
08.09.2025 17:15 β π 0 π 0 π¬ 1 π 0Our paper on the Library of Identification Resources is out! In it, we describe how and why to record publications for the taxonomic identification of organisms in a FAIR database, and how to query that data to find applicable resources for an insect or a plant in NW Europe. Next, we will look [β¦]
26.08.2025 12:17 β π 0 π 4 π¬ 0 π 0Web page with jumbo text "Free and open access to biodiversity data" on top of a banner photo showing a portrait of a standing, deep-orange mongoose staring into the camera.
I always enjoy the banner photos that @gbif puts on their front page but today's is especially good
20.08.2025 09:29 β π 0 π 0 π¬ 0 π 0@kbnationalebibliotheek Ik kon nu bijvoorbeeld de IRIScan Desk 6 Pro lenen maar ondanks de opties voor curve fitting van pagina's en finger removal, heb ik moeite met het plat genoeg houden van pagina's
18.08.2025 13:32 β π 0 π 0 π¬ 0 π 0@kbnationalebibliotheek Hebben jullie tips voor het digitaliseren van oude boeken? De scanners die ik heb geprobeerd zijn niet geweldig (of ik gebruik ze niet goed). Ik heb een aantal oude edities van Heukels' Flora verzameld die inmiddels in het publieke domein vallen, en zou graag goede scans [β¦]
18.08.2025 13:30 β π 0 π 0 π¬ 1 π 0@larsgw that patch is awesome! runs very quickly on the 276k IUPAC names!
pv -l iupac-names.txt | groovy countVariants.groovy > iupac-names-counts.txt
And thx for the following tip!
xsv stats -n -d'\t' iupac-names-counts.txt
Wow, from this 276k names we can generate 3.4 *billion* IUPAC names [β¦]
@egonw I've opened a PR to count the potential variations of a given IUPAC name before validation: https://github.com/egonw/bacting/pull/132. The name you posted in the previous post potentially has 1,953,125 variations with these substitutions.
16.08.2025 20:20 β π 0 π 1 π¬ 2 π 0Screenshot van de reviews van de plugin. five stars: "Hele handige plug-in voor de NWO-ISAAC-portal. Hiermee hoef ik niet meer alle losse kopjes van iedere publicatie in te voeren. Ik gebruik de DOI en alles komt juist in de portal. Top!" five stars: "Werkt geweldig. Bespottelijk dat NWO in 2022 zelf dit soort zaken nog niet op orde heeft, maar zo lang we gedwongen zijn met ISAAC te worstelen is dit de enige manier waarop publicaties redelijk ingevoerd kunnen worden."
dankzij open data en open standards kunnen publicaties en andere research output (*) met een DOI eenvoudig aan de NWO ISAAC database toegevoegd worden https://chromewebstore.google.com/detail/isaac-chrome-extension/kiljfbiapahlahhilgcgfkfjnkgggode
Gebruik je [β¦]
[Original post on mastodon.social]
Just found out https://npm-stat.com/ seems to be gone too.
27.06.2025 09:42 β π 0 π 0 π¬ 1 π 0Sad to see Glitch go. RunKit too, both great platforms learning Node.js
27.06.2025 09:40 β π 0 π 0 π¬ 1 π 0I love Discourse as a software but the visit counters have somehow conditioned me to right click to open a link, just to avoid the counter going up.
27.06.2025 09:33 β π 0 π 0 π¬ 0 π 0Since when do all new laptops have a dedicated Copilot-logo button on the keyboard. HP, ThinkPad, Dell, you can't get around it...
25.06.2025 13:20 β π 0 π 2 π¬ 0 π 0"The novel platform uses Citation.js 67], a versatile library and tool that allows for the conversion of CSL objects to and from many different citation styles, including BibTeX, RIS, and APA, among others." [https://pure.tue.nl/ws/portalfiles/portal/217980364/0870734_Boer_D.J._MSc_thesis_MAP.pdf
21.06.2025 07:58 β π 0 π 1 π¬ 0 π 0New in the Library of Identification Resources: metadata for all volumes of Fauna d'Italia (1956β2023, ISSN: 0430-1226) https://identification-resources.github.io/catalog/series/?issn=0430-1226
26.05.2025 12:26 β π 0 π 0 π¬ 0 π 0I missed it but it looks like npm stopped ranking search results by popularity-quality-maintenance, instead opting for the somewhat more opaque sort variable "Default". See how it was before (note the p-q-m bar chart on the right) [β¦]
23.04.2025 13:20 β π 0 π 0 π¬ 0 π 0[nlpol]
@egonw Dit had in 2008 dan al in het uitgebreid in het nieuws moeten komen. Wel mooi dat sommige partijen er juist tegen zijn omdat de straffen van het OM minder zwaar zijn, dan vraag ik me wie de voorstanders zijn (oh ja, de VVD).
@adafede Thank you again for the help. I finished the data curation that I needed the query for, now I can display these charts https://identification-resources.github.io/taxonomy/taxon/?gbif=1 (among other things)
02.04.2025 23:38 β π 0 π 1 π¬ 0 π 0an ominous I-am-under-NDA-coded warning to immediately uninstall atop has been posted by a reputable tech blogger. https://rachelbythebay.com/w/2025/03/25/atop/
26.03.2025 06:23 β π 18 π 108 π¬ 3 π 1what is going on https://www.theatlantic.com/politics/archive/2025/03/trump-administration-accidentally-texted-me-its-war-plans/682151/
24.03.2025 16:56 β π 0 π 0 π¬ 0 π 0New paper! Comparative morphology of the larval stages of Cholevinae (Coleoptera: Leiodidae), with special reference to those in the Netherlands (https://doi.org/10.1163/22119434-bja10033)
https://larsgw.blogspot.com/2025/03/new-paper-identification-of-cholevinae.html
@adafede I'm so confused, that's the query I started with, just without BIND(). I didn't realize that was such a problem, does BIND() not work with FILTER NOT EXISTS?
19.03.2025 13:04 β π 0 π 0 π¬ 1 π 0