CRAN Updates

Removed from CRAN: qsort (0.2.3)

Updates on CRAN: imager (1.0.5)

Removed from CRAN: fscaret (0.9.4.4), ggalt (0.4.0), hmeasure (1.0-2), vivid (0.2.9)

Updates on CRAN: googleLanguageR (0.3.0.1), likert (1.3.5.1), pgnorm (2.0.1)

AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator A novel interpretable machine learning-based framework to automate the development of a clinical scoring model for predefined outcomes. Our novel framework consists of six modules: variable ranking with machine learning, variable transformation, score derivation, model selection, domain knowledge-based score fine-tuning, and performance evaluation.The details are described in our research paper&lt;<a href="https://doi.org/10.2196%2F21798" target="_top">doi:10.2196/21798</a>&gt;. Users or clinicians could seamlessly generate parsimonious sparse-score risk models (i.e., risk scores), which can be easily implemented and validated in clinical practice. We hope to see its application in various medical case studies.

New on CRAN: AutoScore (1.1.0). View at https://CRAN.R-project.org/package=AutoScore

Updates on CRAN: GLCMTextures (0.6.3), mantis (0.4.3)

Removed from CRAN: rvif (3.0)

Updates on CRAN: UCSCXenaShiny (2.2.0)

smoothROCtime: Smooth Time-Dependent ROC Curve Estimation Computes smooth estimations for the Cumulative/Dynamic and Incident/Dynamic ROC curves, in presence of right censorship, based on the bivariate kernel density estimation of the joint distribution function of the Marker and Time-to-event variables.

New on CRAN: smoothROCtime (0.1.1). View at https://CRAN.R-project.org/package=smoothROCtime

Updates on CRAN: ClassificationEnsembles (0.6.0), ecos (0.1.7), hdcuremodels (0.0.5), mlr3pipelines (0.9.0), modeldata (1.5.0), OlinkAnalyze (4.3.1), orcamentoBR (1.0.5), photobiology (0.13.2)

Removed from CRAN: baRulho (2.1.5), dynaSpec (1.0.4), ohun (1.0.3), Rraven (1.0.15), warbleR (1.1.36)

Updates on CRAN: actuaRE (0.1.6), badger (0.2.5), CohortGenerator (0.12.0), DVHmetrics (0.4.3), gofigR (1.1.2), ieugwasr (1.1.0), rlandfire (2.0.1), rush (0.3.0), stochvol (3.2.6), tangram (0.8.3)

clmplus: Tool-Box of Chain Ladder Plus Models Implementation of the age–period–cohort models for claim development presented in Pittarello G, Hiabu M, Villegas A (2025) “Replicating and Extending Chain‑Ladder via an Age–Period–Cohort Structure on the Claim Development in a Run‑Off Triangle” &lt;<a href="https://doi.org/10.1080%2F10920277.2025.2496725" target="_top">doi:10.1080/10920277.2025.2496725</a>&gt;.

New on CRAN: clmplus (1.0.1). View at https://CRAN.R-project.org/package=clmplus

Updates on CRAN: ggformula (0.12.2), islasso (1.6.0), IsoplotRgui (6.7), labdsv (2.1-2), landsepi (1.5.2), mlr3fselect (1.4.0), QBMS (2.0.0), sanba (0.0.2), slendr (1.2.0), V8 (6.0.5)

Updates on CRAN: AzureGraph (1.3.5), AzureRMR (2.4.5), BayesLN (0.2.12), bbnet (1.2.0), boostmath (1.0.2), campsismod (1.2.3), ChemoSpec (6.3.0), fso (2.1-4), FuzzySTs (0.4)

suRface.analytics: Statistical Analysis and Visualization of Surface-Engineered Material Properties A collection of functions for statistical and multivariate analysis of surface-related data, with a focus on antimicrobial activity and omniphobicity. Designed to support materials scientists and researchers in exploring structure–function relationships in surface-engineered materials through reproducible and interpretable workflows. For more details, see Li et al. (2021) &lt;<a href="https://doi.org/10.1002%2Fadvs.202100368" target="_top">doi:10.1002/advs.202100368</a>&gt;, and Kwon et al. (2020) &lt;<a href="https://doi.org/10.3390%2Fpolym12081826" target="_top">doi:10.3390/polym12081826</a>&gt;.

New on CRAN: suRface.analytics (0.1.0). View at https://CRAN.R-project.org/package=suRface.analytics

simIC: Simulate and Analyze Interval- and Mixed-Censored Survival Data Provides tools to simulate and analyze survival data with interval-, left-, right-, and uncensored observations under common parametric distributions, including "Weibull", "Exponential", "Log-Normal", "Log-Logistic", "Gamma", "Gompertz", "Normal", "Logistic", and "EMV". The package supports both direct maximum likelihood estimation and imputation-based methods, making it suitable for methodological research, simulation benchmarking, and teaching. A web-based companion app is also available for demonstration purposes.

New on CRAN: simIC (0.1.0). View at https://CRAN.R-project.org/package=simIC

Pv3Rs: Estimate the Cause of Recurrent Vivax Malaria using Genetic Data Plot malaria parasite genetic data on two or more episodes. Compute per-person posterior probabilities that each Plasmodium vivax (Pv) recurrence is a recrudescence, relapse, or reinfection (3Rs) using per-person P. vivax genetic data on two or more episodes and a statistical model described in Taylor, Foo and White (2022) &lt;<a href="https://doi.org/10.1101%2F2022.11.23.22282669" target="_top">doi:10.1101/2022.11.23.22282669</a>&gt;. Plot per-recurrence posterior probabilities.

New on CRAN: Pv3Rs (0.0.2). View at https://CRAN.R-project.org/package=Pv3Rs

otel: 'OpenTelemetry' 'R' 'API' 'OpenTelemetry' is a collection of tools, 'APIs', and 'SDKs' used to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) for analysis in order to understand your software's performance and behavior. This package implements the 'OpenTelemetry' 'API': &lt;<a href="https://opentelemetry.io/docs/specs/otel/" target="_top">https://opentelemetry.io/docs/specs/otel/</a>&gt; Use this package as a dependency if you want to instrument your R package for 'OpenTelemetry'.

New on CRAN: otel (0.1.0). View at https://CRAN.R-project.org/package=otel

ggdibbler: Add Uncertainty to Data Visualisations A 'ggplot2' extension for visualising uncertainty with the goal of signal suppression. Usually, uncertainty visualisation focuses on expressing uncertainty as a distribution or probability, whereas 'ggdibbler' differentiates itself by viewing an uncertainty visualisation as an adjustment to an existing graphic that incorporates the inherent uncertainty in the estimates. You provide the code for an existing plot, but replace one of the variables with a vector of distributions, and it will convert the visualisation into it's signal suppression counterpart.

New on CRAN: ggdibbler (0.1.0). View at https://CRAN.R-project.org/package=ggdibbler

AirScreen: Feature Screening via Adaptive Iterative Ridge (Air-HOLP and Air-OLS) Implements two complementary high-dimensional feature screening methods, Adaptive Iterative Ridge High-dimensional Ordinary Least-squares Projection (Air-HOLP, suitable when the number of predictors p is greater than or equal to the sample size n) and Adaptive Iterative Ridge Ordinary Least Squares (Air-OLS, for n greater than p). Also provides helper functions to generate compound-symmetry and AR(1) correlated data, plus a unified Air() front end and a summary method. For methodological details see Joudah, Muller and Zhu (2025) &lt;<a href="https://doi.org/10.1007%2Fs11222-025-10599-6" target="_top">doi:10.1007/s11222-025-10599-6</a>&gt;.

New on CRAN: AirScreen (0.1.0). View at https://CRAN.R-project.org/package=AirScreen

Updates on CRAN: acdcquery (1.1.0), parafac4microbiome (1.3.2), PhenotypeR (0.2.0), pROC (1.19.0.1), RWsearch (5.2.6), saemix (3.4), tidyposterior (1.0.2)

Removed from CRAN: nomisr (0.4.7), rdracor (1.0.4), rfars (1.2.0)

Updates on CRAN: imageData (0.1.64), jrt (1.1.3), NPLStoolbox (1.1.0), SplitWise (1.0.2)

Updates on CRAN: evola (1.0.6), GSODR (4.1.4), lme4breeding (1.0.70)

yarrr: A Companion to the e-Book "YaRrr!: The Pirate's Guide to R" Contains a mixture of functions and data sets referred to in the introductory e-book "YaRrr!: The Pirate's Guide to R". The latest version of the e-book is available for free at &lt;<a href="https://bookdown.org/ndphillips/YaRrr/" target="_top">https://bookdown.org/ndphillips/YaRrr/</a>&gt;.

New on CRAN: yarrr (0.1.14). View at https://CRAN.R-project.org/package=yarrr

Updates on CRAN: bdots (2.0.0), cccp (0.3-2), connectapi (0.8.0), ConversationAlign (0.3.2), GeoModels (2.1.8), JANE (2.0.0), mlr3 (1.1.0), movementsync (0.1.5), netgsa (4.0.6), rscopus (0.9.0), shotGroups (0.8.4)

Updates on CRAN: bigutilsr (0.3.11), CohortConstructor (0.5.0), cophescan (1.4.2), fastR2 (1.2.5), funcMapper (1.0.2), ILSM (1.1.0.1), medparser (0.2.0), metaforest (0.1.5), mosaic (1.9.2), movedesign (0.3.2), probably (1.1.1), RGENERATEPREC (1.3.2), tidySEM (0.2.9), xega (0.9.0.12)

Updates on CRAN: clubSandwich (0.6.1), EFAtools (0.6.1), ggmice (0.1.1), iNEXT (3.0.2), intamap (1.5-11), IsoplotR (6.7), OmicNavigator (1.16.0), ResIN (2.2.1), xegaPopulation (1.0.0.8)

Removed from CRAN: dtmapi (0.0.3)