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Mat Beale

@typemat12.bsky.social

Microbial (meta)genomics researcher @sangerinstitute interested in genomic epidemiology and evolutionary dynamics of STIs/NTDs/AMR in complex samples. Views my own. https://www.sanger.ac.uk/person/beale-mathew/

572 Followers  |  513 Following  |  83 Posts  |  Joined: 05.09.2024  |  1.9767

Latest posts by typemat12.bsky.social on Bluesky

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this is pretty much the plot of the movie clear and present danger

08.08.2025 14:01 β€” πŸ‘ 454    πŸ” 133    πŸ’¬ 24    πŸ“Œ 11

Aieeeeeeeeee.

07.08.2025 15:14 β€” πŸ‘ 13    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0

It’s started #stihiv2025 πŸ§ͺ
Fantastic keynote by Henry de Vries

His short history of #STI covers changing views of STIs, sexuality, AIDS, queer theory and sex positivity

But moves on to where we are now with illiberalism

And a shout out ahead of the closing keynote @drjeannem.bsky.social

27.07.2025 23:04 β€” πŸ‘ 8    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0

I’m here!

26.07.2025 20:30 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
STI&HIV2025 World Congress starts in Montreal Sunday 27th July https://stihiv2025.org/

STI&HIV2025 World Congress starts in Montreal Sunday 27th July https://stihiv2025.org/

STI & HIV 2025 World Congress #stihiv2025 starts Montreal Sunday 27th July stihiv2025.org/program/ @stihiv2025.org

Absolutely delighted for this to be my first πŸ§ͺ feed post

The world's biggest conference dedicated to research on sexually transmitted infections #chlamydia #gonorrhoea #syphilis
🧡

26.07.2025 19:07 β€” πŸ‘ 12    πŸ” 3    πŸ’¬ 2    πŸ“Œ 1
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Enjoying the beautiful weather in beautiful Montreal ahead of #stihiv2025

26.07.2025 19:09 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Nothing better than talking syphilis! Thanks @ukhsa.bsky.social @thelovetankcic.bsky.social @typemat12.bsky.social @nicolelieberman.bsky.social @manikkohli.bsky.social & others who came to kick off my NIHR Professorship. Looking forward to working with you & communities to improve UK Sexual Health

23.07.2025 11:04 β€” πŸ‘ 16    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
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Professor Robin May to join UKHSA as Chief Scientific Officer UKHSA has appointed Professor Robin May as Interim Chief Scientific Officer.

Terrific news that @robinmay9.bsky.social of @imibirmingham.bsky.social has been appointed CSO of @ukhsa.bsky.social today! www.gov.uk/government/n... A fantastic choice!

21.07.2025 11:30 β€” πŸ‘ 18    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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Global dissemination of npmA mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria - Nature Communications The authors investigate the distribution of the aminoglycoside resistance gene npmA in Gram-positive bacteria via a mobile genetic element, highlighting its global presence and cross-species transfer ...

Our paper β€œGlobal dissemination ofβ€―npmA mediated pan‑aminoglycoside resistance via a mobile element in Gram‑positive bacteria” is now in @natcomms.nature.com. Part of my freshly defended PhD, so doubly happy! πŸ˜„πŸŽ‰

🧡 (1/14)

www.doi.org/10.1038/s414...

17.07.2025 12:13 β€” πŸ‘ 38    πŸ” 19    πŸ’¬ 3    πŸ“Œ 4
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Benefits and risks: informal use of antibiotics to prevent sexually transmitted infections on the rise in key populations in the Netherlands Survey data from the Netherlands show high interest and intention to use antibiotics to prevent sexually transmitted infections (STIs). A new approach to prevent bacterial sexually transmitted infecti...

Using the antibiotic doxycycline used as post-exposure & pre-exposure prophylaxis (doxyPEP/PrEP) can prevent #STI

Even though it's currently not recommended in the Netherlands, 15% of 1,633 survey participants stated recent informal use without prescription

#SexualHealth #IDSky #AMR #PublicHealth

07.07.2025 07:15 β€” πŸ‘ 4    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

Incredible opportunity to work with an excellent team AND undertake a funded PhD on syphilis and STI control in the UK πŸ‘‡

29.06.2025 14:55 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Suggest revising the freetext questions - β€œvcf” or β€œVcf” = wrong, VCF = right. I only got freetext ones wrong.

Also why no love for pacbio?

20.06.2025 13:15 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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I, Saruman, Have Ended My Alliance with the Dark Lord Sauron β€œLast year, two mercurial billionaires formed a partnership and vowed to drive the country in a new direction. Donald Trump had the political power...

Lately McSweeneys is a really consistent source of socio-political bangers.
www.mcsweeneys.net/articles/i-s...

07.06.2025 15:57 β€” πŸ‘ 15    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0

🚨 We're recruiting! The Journal of Medical Microbiology is seeking two Editors for our Molecular and Microbial Epidemiology section. Help shape the future of microbiology research.
πŸ“… Apply by 20 June 2025
πŸ”— microb.io/News

03.06.2025 08:03 β€” πŸ‘ 2    πŸ” 8    πŸ’¬ 0    πŸ“Œ 0

Highlighting the importance of access not only to the new gonorrhoea vaccine, but to sexual health services more broadly πŸ‘‡

27.05.2025 12:55 β€” πŸ‘ 8    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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A tour de force in investigating and building capacity for a neglected tropical disease through genomics by @chewapreecha.bsky.social

23.05.2025 10:20 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Great on fungal pathogen threats from @chownbioinf.bsky.social (with slides from @drjorhodes.com) #ABPHM25

23.05.2025 08:54 β€” πŸ‘ 7    πŸ” 0    πŸ’¬ 0    πŸ“Œ 1
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PhD Microbial Genomics for Health Protection, Biosciences - University of Birmingham PhD in Microbial Genomics, exciting new Doctoral Training Programme in Microbial Genomics for Health Protection in collaboration with the UK Health Security Agency (UKHSA) launches

An exciting new Doctoral Training Programme in Microbial Genomics for Health Protection, in collaboration with the UK Health Security Agency @ukhsa.bsky.social, has just launched, funded by @nihr.bsky.social there are 9 PhD projects available (UK students only) www.birmingham.ac.uk/research/cen...

23.05.2025 08:34 β€” πŸ‘ 11    πŸ” 19    πŸ’¬ 0    πŸ“Œ 1
Ebenezer Foster-Nyarko presenting his introductory slide on cholera genomics at the ABPHM 2025 conference

Ebenezer Foster-Nyarko presenting his introductory slide on cholera genomics at the ABPHM 2025 conference

Super talk from @efosternyarko.bsky.social @lshtmamrcentre.bsky.social on nanopore based sequencing of cholera across Africa, with PulseNet Africa partners

#ABPHM25

www.biorxiv.org/content/10.1...

21.05.2025 14:03 β€” πŸ‘ 21    πŸ” 7    πŸ’¬ 1    πŸ“Œ 0
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🧡5 Top Free Alternatives to BioRender for Scientific Illustrations!

These five websites offer free scientific illustrations for biologists. Great for presentations, research papers and other research communication needs.

Save and share the post!

13.05.2025 19:55 β€” πŸ‘ 677    πŸ” 348    πŸ’¬ 34    πŸ“Œ 6
The nasal microbiome redefines Staphylococcus aureus colonisation Staphylococcus aureus colonises the nose in humans, with individuals defined as persistent, intermittent or non-carriers. Unlike the gut microbiome, the nasal microbiome has not been studied in large ...

Happy to share our first preprint looking at the nasal microbiome in ~1000 healthy adults from the CARRIAGE study of 20,000 healthy blood donors to understand nasal colonisation by Staphylococcus aureus. Ten years in the making! doi.org/10.21203/rs....

07.05.2025 11:35 β€” πŸ‘ 7    πŸ” 2    πŸ’¬ 0    πŸ“Œ 1
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High frequency body site translocation of nosocomial Pseudomonas aeruginosa Pseudomonas aeruginosa is an important nosocomial pathogen which can cause serious infections across diverse anatomic locations. Infections can spread within an individual to different body sites, but...

Happy to share the first preprint from my lab. Great work by Lewis Fisher and collaboration with Jukka Corander
www.biorxiv.org/content/10.1...

01.05.2025 06:32 β€” πŸ‘ 24    πŸ” 17    πŸ’¬ 1    πŸ“Œ 0

Agreed - my first thought when I saw this was "why not just use ENA anyway?". I'm open to being convinced there is a reason to prefer SRA (even with this).

30.04.2025 15:00 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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a man in a suit and tie is laying on the ground in a park with his arms outstretched . ALT: a man in a suit and tie is laying on the ground in a park with his arms outstretched .
26.04.2025 13:57 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

It's Bezos's space rocket (which in no way looks like anything else)

24.04.2025 15:45 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Yesterday was my one-year work anniversary with the @sangerinstitute.bsky.social! One year has flown by.

The variety of topics I've gotten to research and write about (🧡), the people I've met and interviewed, and the dino-mini golf that's been played have all made this a memorable year.

23.04.2025 15:55 β€” πŸ‘ 6    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
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High intra-laboratory reproducibility of nanopore sequencing in bacterial species underscores advances in its accuracy. Find out more in #MGen: doi.org/10.1099/mgen...

11.04.2025 11:00 β€” πŸ‘ 3    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0

So glad this is finally out. The method has been instrumental in allowing us to compress the AllTheBacteria data - ~2 million bacterial genomes shrink from 3Terabytes (gzipped) to 100Gb using phylogenetic compression. Great work by @brinda.eu

09.04.2025 22:27 β€” πŸ‘ 126    πŸ” 51    πŸ’¬ 4    πŸ“Œ 1

1 week until deadline for this postdoc position. Really key position in my lab working on amazing datasets

09.04.2025 05:07 β€” πŸ‘ 4    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
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CDC’s top laboratory on sexually transmitted diseases is shut by Trump administration The Trump administration fired everyone in a CDC lab that is crucial to tracking drug-resistant gonorrhea and other sexually transmitted diseases. "We are blind," an expert says.

If lost there's no going back: "...the lab holds the world’s largest repository of gonorrhea isolates β€” over 50,000, dating back to 1988 when the CDC began to collect them."

www.statnews.com/2025/04/05/c...

07.04.2025 09:21 β€” πŸ‘ 46    πŸ” 19    πŸ’¬ 1    πŸ“Œ 1

@typemat12 is following 20 prominent accounts